diff options
| author | zsloan | 2024-03-21 20:46:14 +0000 |
|---|---|---|
| committer | zsloan | 2024-03-21 20:46:14 +0000 |
| commit | 5fa946c9da7896fbc5c588f339653e1b5c749269 (patch) | |
| tree | c61cfef767ea0ab5e5495feee83ff2d1ea650503 | |
| parent | 55ab13bd0c60b5399485360fc76115d574e1a2e6 (diff) | |
| download | genenetwork2-5fa946c9da7896fbc5c588f339653e1b5c749269.tar.gz | |
Fix issue where Haplotype band could overlap with Homology band (plus other spacing issues related to the Homology band)
Change Homology track colors to be more color-blind friendly
| -rw-r--r-- | gn2/wqflask/marker_regression/display_mapping_results.py | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/gn2/wqflask/marker_regression/display_mapping_results.py b/gn2/wqflask/marker_regression/display_mapping_results.py index b55b772e..0f1df3ec 100644 --- a/gn2/wqflask/marker_regression/display_mapping_results.py +++ b/gn2/wqflask/marker_regression/display_mapping_results.py @@ -213,9 +213,9 @@ class DisplayMappingResults: DOMINANCE_COLOR_NEGATIVE = RED # BEGIN HaplotypeAnalyst - HAPLOTYPE_POSITIVE = GREEN - HAPLOTYPE_NEGATIVE = RED - HAPLOTYPE_HETEROZYGOUS = BLUE + HAPLOTYPE_POSITIVE = BLUE + HAPLOTYPE_NEGATIVE = YELLOW + HAPLOTYPE_HETEROZYGOUS = GREEN HAPLOTYPE_RECOMBINATION = DARKGRAY # END HaplotypeAnalyst @@ -1824,8 +1824,11 @@ class DisplayMappingResults: # Draw Genes - geneYLocation = yPaddingTop + self.NUM_GENE_ROWS * \ - (self.EACH_GENE_HEIGHT) * zoom + geneYLocation = yPaddingTop + if (self.geneChecked and self.geneCol): + geneYLocation += self.NUM_GENE_ROWS * self.EACH_GENE_HEIGHT * zoom + if (self.homologyChecked and self.homology): + geneYLocation += self.NUM_GENE_ROWS * self.EACH_GENE_HEIGHT * zoom if self.dataset.group.species == "mouse" or self.dataset.group.species == "rat": geneYLocation += 4 * self.BAND_HEIGHT + 4 * self.BAND_SPACING else: |