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2021-06-17Fixed issue that caused filtering by attribute values to not work if ↵zsloan
attribute values didn't exist for some samples
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-17doc: Add results of investing rpy2 blocking issue in gn2BonfaceKilz
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-17doc: Add results of investing rpy2 blocking issue in gn2BonfaceKilz
2021-06-16Fixed reference to target_trait['lrs_location'] that should have been ↵zsloan
target_trait['location'] for correlations against genotypes
2021-06-16Changed the function jsonable in trait.py to return a couple extra fields + ↵zsloan
take dataset as an optional argument (to avoid having to pointlessly create it)
2021-06-16Added function as_dict to data_set.py for situations where we don't want to ↵zsloan
pass around the whole dataset object
2021-06-16Changed set_other_template_vars to set_template_varszsloan
2021-06-16Rewrote show_corr_results.py to remove all code calculating correlations ↵zsloan
(that was moved to correlation_gn3_api.py, which will probably be renamed at some point) and only include the code generating the table JSON and some template variables
2021-06-16Added compute_all as parameter to compute_correlation and keyword arguments ↵zsloan
to docstring
2021-06-16Changed correlation page template to account for differences in the output ↵zsloan
returned from the GN3 API correlation code
2021-06-16Changed views.py to call the correlation code using the GN3 API + a function ↵zsloan
in show_corr_results for setting other template vars (might change this later)
2021-06-15Use markdown from Github for Newszsloan
2021-06-15Commented out Biweight Midcorrelation option on trait page, since it uses ↵zsloan
rpy2 and is currently disabled
2021-06-15Commented out WGCNA/CTL imports and endpoints since they import rpy2zsloan
2021-06-15Commented out WGCNA and CTL Analysis buttons from tool_buttons.html since ↵zsloan
they use rpy2
2021-06-15Commented out rpy2 code and import from show_corr_results.pyzsloan
2021-06-15Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-06-15Fix issue where column values were used as str instead of bytes; pretty sure ↵zsloan
this was introduced by Python3
2021-06-15Webinars have been added to tutorials.htmlacentenoArthur Centeno
2021-06-15Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acentenoArthur Centeno
2021-06-15Adding new content to tutorials.htmlArthur Centeno
2021-06-14Temporarily return None for tissue correlation and remove rpy2 importszsloan
2021-06-14Removed unused rpy code from show_corr_results.pyzsloan
2021-06-14Comment out PCA code and remove rpy2 imports in correlation matrix codezsloan
2021-06-08Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-06-08Changed StringIO to BytesIO since it apparently needs to be useed with ↵zsloan
ZipFile writestr in Python 3
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