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authorAlexander Kabui2021-06-14 00:54:02 +0300
committerzsloan2021-06-17 18:51:27 +0000
commit48e66dc230292a9c0b66da946106d8c9f611074f (patch)
treec57698540f4c39ea9565e8c06a7d8c146798ba2a
parent481b1fede3c815d5b9afbb07f0f69dcb7363143e (diff)
downloadgenenetwork2-48e66dc230292a9c0b66da946106d8c9f611074f.tar.gz
sort sample name by sample_ids
-rw-r--r--wqflask/base/data_set.py6
1 files changed, 5 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 4d54cfae..991c9fee 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -705,6 +705,9 @@ class DataSet:
results = dict(g.db.execute(query).fetchall())
sample_ids = [results[item] for item in self.samplelist]
+ sorted_samplelist = [strain_name for strain_name, strain_id in sorted(
+ results.items(), key=lambda item: item[1])]
+
query = """SELECT * from ProbeSetData
where StrainID in {}
and id in (SELECT ProbeSetXRef.DataId
@@ -714,9 +717,10 @@ class DataSet:
and ProbeSet.Id = ProbeSetXRef.ProbeSetId)""".format(create_in_clause(sample_ids), self.name)
query_results = list(g.db.execute(query).fetchall())
-
data_results = self.chunk_dataset(query_results, len(sample_ids))
+ self.samplelist = sorted_samplelist
self.trait_data = data_results
+
def get_trait_data(self, sample_list=None):
if sample_list: