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chores/code-refactoring
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refactor-data_set_py-20220920
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Author
2022-09-09
Remove `None` values from dataset
Frederick Muriuki Muriithi
2022-09-09
Filter out Samples without values
Frederick Muriuki Muriithi
2022-09-09
Refactor: Add tests and handle edge case
Frederick Muriuki Muriithi
2022-09-09
Use `database_connection()`
Frederick Muriuki Muriithi
2022-09-09
Replace `g.db.execute` with `cursor.execute`
Frederick Muriuki Muriithi
2022-09-09
Comment out pickling to avoid error
Frederick Muriuki Muriithi
2022-09-09
If port is null, use MySQL's default 3306
Frederick Muriuki Muriithi
2022-09-09
Use `urllib.parse.urljoin` for urls
Frederick Muriuki Muriithi
2022-09-08
Filter export by checked rows (when any rows are checked)
zsloan
2022-09-08
Fix getCheckedRows so that it only selects checkbox input elements
zsloan
2022-09-08
Convert variables to camelCase and remove some unused variables
zsloan
2022-09-08
Remove commented out code
zsloan
2022-09-08
Remove console log
zsloan
2022-09-08
Remove some unused initialized variables
zsloan
2022-09-08
Make GN_SERVER_URL the genenetwork3 API endpoint.
Arun Isaac
2022-09-08
Replace "asserts" with ValueErrors
Munyoki Kilyungi
2022-09-08
Delete unused imports
Munyoki Kilyungi
2022-09-08
Simplify how chromosomes are fetched
Munyoki Kilyungi
2022-09-08
Add type-hints to database_connection
Munyoki Kilyungi
2022-09-08
Test the creation of the_species, indchromosomes and chromosome objs
Munyoki Kilyungi
2022-09-08
Removing object notation after a cursor fetch
Munyoki Kilyungi
2022-09-08
Remove redundant cursor.fetchone()
Munyoki Kilyungi
2022-09-08
Use "%s" in sql query
Munyoki Kilyungi
2022-09-08
Move test case to mrna_assay_tissue_data test module
Munyoki Kilyungi
2022-09-08
Inject database connection to mrna_assay_tissue_data class
Munyoki Kilyungi
2022-09-08
Rewrite "test_tissue_corr_computation" as a pytest
Munyoki Kilyungi
2022-09-08
Use "%s" instead of "%2.6f" or "%d" in query.
Munyoki Kilyungi
2022-09-08
Fix sql queries
Munyoki Kilyungi
2022-09-08
Deleting utility.logger
Munyoki Kilyungi
2022-09-08
Add missing "," in cursor.execute()
Munyoki Kilyungi
2022-09-08
Delete unused imports
Munyoki Kilyungi
2022-09-08
Remove intermediate variables that are only used once
Munyoki Kilyungi
2022-09-08
Force pytest to use "importlib" import-mode to be able to run
Munyoki Kilyungi
2022-09-08
Replace "g.db" mocks with "database_connection" mocks
Munyoki Kilyungi
2022-09-08
Adjust expected table width
Munyoki Kilyungi
2022-09-08
Condense test-cases for "get_ncbi_summary_request" into one test
Munyoki Kilyungi
2022-09-08
Parametrize test cases for "check_if_attr_exists"
Munyoki Kilyungi
2022-09-08
Add extra distinct_values and id attributes to test TraitObject
Munyoki Kilyungi
2022-09-08
Remove app initialisation in test
Munyoki Kilyungi
2022-09-08
Recommend pytests in README
Munyoki Kilyungi
2022-09-08
Move data.gen_menu_json to test_data_set.py
Munyoki Kilyungi
2022-09-08
Replace "g.db" with "database_connection" in documentation
Munyoki Kilyungi
2022-09-08
Remove "g.db" init from every session
Munyoki Kilyungi
2022-09-08
Remove sql_alchemy initialisation when profiling correlations
Munyoki Kilyungi
2022-09-08
Delete dead imports
Munyoki Kilyungi
2022-09-08
Replace g.db with database_connection() context manager
Munyoki Kilyungi
2022-09-08
Delete logger import
Munyoki Kilyungi
2022-09-08
Replace assertion with Value Error for non-existent dataset
Munyoki Kilyungi
2022-09-08
Replace g.db with database_connection() context manager
Munyoki Kilyungi
2022-09-08
Delete insert query that's not run
Munyoki Kilyungi
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