| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-08-12 | Add a profiling script | Frederick Muriuki Muriithi | |
| Add a script to enable profiling the code. | |||
| 2022-08-12 | Fix some issues with the tests. Add notes in code for improvements. | Frederick Muriuki Muriithi | |
| 2022-08-11 | Add data-trait-info attribute to checkboxes on search results page | zsloan | |
| Currently there's a separate trait_info_str function in search_results.py, because search_results.py doesn't build the trait objects (so it can't use the one in collect.py unless I change that to accept traits as either a GeneralTrait class or dict - which might be better, I'm not sure) | |||
| 2022-08-11 | Refactor: separate the three correlation types | Frederick Muriuki Muriithi | |
| Refactor the code such that each correlation type (sample, tissue, literature) is computed in its own function. This makes the code clearer, and helps reduce repetition. | |||
| 2022-08-11 | Fix correlation tests: Fix the test message. | Frederick Muriuki Muriithi | |
| 2022-08-11 | Check for keys before using them. | Frederick Muriuki Muriithi | |
| 2022-08-11 | Update format to prevent tissue correlation from failing | Frederick Muriuki Muriithi | |
| Update the data format of returned values so that it conforms with expectatitions. | |||
| 2022-08-10 | Check that the correlations work as expected. | Frederick Muriuki Muriithi | |
| 2022-08-10 | Fix formatting for legibility | Frederick Muriuki Muriithi | |
| 2022-08-10 | code to merge results;minor fixes | Alexander_Kabui | |
| 2022-08-10 | compute top n tissue results | Alexander_Kabui | |
| 2022-08-10 | add code to compute top n tissue results | Alexander_Kabui | |
| 2022-08-09 | Fix minor bug. | Frederick Muriuki Muriithi | |
| 2022-08-09 | Integrate rust correlations. Deduplicate similar code. | Frederick Muriuki Muriithi | |
| - Use rust correlations rather than the slower python one - Remove code duplicated in the `wqflask/wqflask/correlation/rust_correlation.py` module within the `compute_correlation_rust` function. | |||
| 2022-08-09 | Display the probeset name in the editing form | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to the h1 tag. | |||
| 2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button. Make button green. Move form element into the "container" div. Add "container" class to form. Left justify labels, and the button. Remove ":" from labels. | |||
| 2022-08-09 | Delete "diff" section | Munyoki Kilyungi | |
| For both the edit phenotype and probeset pages, the diffs can be viewed from history.html. * wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs" section. * wqflask/wqflask/templates/edit_probeset.html: Ditto. | |||
| 2022-08-09 | Remove "diff" logic from edit_probeset | Munyoki Kilyungi | |
| * wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for fetching diff. Move that... (show_history): ... here * wqflask/wqflask/templates/edit_probeset.html: Update template to show diffs in a history.html. Reposition and rename the h1 tag of this page. | |||
| 2022-08-09 | Update h1 title of history page | Munyoki Kilyungi | |
| ATM, we don't show the name of the phenotype whose history we are changing. That may be updated in a future commit. * wqflask/wqflask/templates/edit_history.html: Reword h1 and remove "{{}}" which results in a jinja error. | |||
| 2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi | |
| 2022-08-09 | Integrate rust correlation for "sample" correlation selection | Frederick Muriuki Muriithi | |
| Integrate the use of the rust code to compute the correlations for the "sample" correlation selection. | |||
| 2022-08-09 | Pass trait values (X) as list not string | Frederick Muriuki Muriithi | |
| The trait values (X values) are converted to JSON within the `run_correlation` call. Since JSON has the ability to represent lists of objects, there is no point for the added conversion to and from strings. | |||
| 2022-08-08 | remove unnessary append to list | Alexander_Kabui | |
| 2022-08-08 | remove test;test is redundant | Alexander_Kabui | |
| 2022-08-08 | tests refactoring | Alexander_Kabui | |
| 2022-08-05 | Include partial_correlations.js in the search page template | zsloan | |
| 2022-08-02 | Define ROrRho and corr_method in JS to get rid of some of the template logic ↵ | zsloan | |
| that was mixed into the JS | |||
| 2022-08-02 | Move logic for creating authors display string to the server-side Python ↵ | zsloan | |
| code + change this_trait to trait_dict to be more consistent with the regular search variable names | |||
| 2022-08-02 | Move logic for creating authors display string to the server-side Python code | zsloan | |
| 2022-08-02 | Remove unused parameters from trait page sample table's column render functions | zsloan | |
| 2022-08-02 | Remove unused parameters from gsearch_pheno.html's column render functions | zsloan | |
| 2022-08-02 | Remove unused parameters from gsearch_gene.html's column render functions | zsloan | |
| 2022-08-02 | Remove unused parameters from collections/view.html column render functions | zsloan | |
| 2022-08-02 | Remove unused parameters from correlation_page.html column render functions | zsloan | |
| 2022-08-02 | Remove unused parameters from column render functions in search_result_page.html | zsloan | |
| 2022-08-02 | Condense some conditional logic | zsloan | |
| 2022-08-01 | Remove console logs from scatterplot.js | zsloan | |
| 2022-08-01 | Change Make Default button to Save Settings | zsloan | |
| 2022-08-01 | Add date/time to trait page export | zsloan | |
| 2022-08-01 | Add header/description to partial correlation page | zsloan | |
| 2022-08-01 | Add index column and phenotype group code to trait export | zsloan | |
| 2022-08-01 | Change min-width to something more reasonable (will put this in CSS later) | zsloan | |
| 2022-08-01 | Fix BNW link by making it https | zsloan | |
| 2022-08-01 | Remove commented out code | zsloan | |
| 2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi | |
| 2022-07-27 | From console log from plotly_probability_plot.js | zsloan | |
| 2022-07-27 | Change most variables in show_trait.js to camelCase | zsloan | |
| 2022-07-27 | Define drawCallback in trait page tableSettings, since this table shouldn't ↵ | zsloan | |
| call change_buttons | |||
| 2022-07-27 | Use create_datatable.js to create trait page sample data tables + change ↵ | zsloan | |
| most variables to camelCase | |||
| 2022-07-27 | Add necessary new JS files to show_trait.html and make formatting of all js ↵ | zsloan | |
| imports the same | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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