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2016-04-20Handle settings in guix storepjotrp
2016-04-20setup: prepare for Guix runtimepjotrp
2016-04-20Remove dbdocpjotrp
2016-04-20Removed symlinkspjotrp
2016-04-20r-wgcna: Fix pathspjotrp
2016-04-20More hard-codedpjotrp
2016-04-20[PATCH 050/100] Using out-of-tree storage. Added comments for plink,... gemma. Pjotr Prins
2016-04-20[PATCH 049/100] SNP_PATH: removalPjotr Prins
2016-04-20Update INSTALL.mdpjotrp
2016-04-20[PATCH 047/100] This commit moves the image generation dir *outside* the git ...Pjotr Prins
2016-04-20external program should fail on return value not zeropjotrp
2016-04-20[PATCH 045/100] Reverted on previous changes. With a corrected... python2-piddle module the thing works. Turns out that the version we are using is not the same as the public one. Despite the same version number. Pjotr Prins
2016-04-20Minor fixespjotrp
2016-04-20[PATCH 042/100] Sanitizing locationsPjotr Prins
2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20When a sample does not exist we should not set sample_data to None. Better to...pjotrp
2016-04-20-a...[PATCH 039/100] Removing commented code Pjotr Prins
2016-04-20-a...[PATCH 038/100] Fix compile errors Pjotr Prins
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20With missing samples to not add them to the result setpjotrp
2016-04-20This threw an error when sample is missing in the DB....Let sample pass without data if the sample/genotype does not exist in the database. pjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20[PATCH 032/100] file locating: error checking is built-inPjotr Prins
2016-04-20Fine tuning file locatingpjotrp
2016-04-20tools.py: add function locate_without_errorpjotrp
2016-04-20Tell redis where to store its persistent dbpjotrp
2016-04-20[PATCH 027/100] Introduce tools.locatePjotr Prins
2016-04-20[PATCH 026/100] Introducing cached values PYLMM_COMMAND,... GEMMA_COMMAND, PLINK_COMMAND and TEMPDIR Pjotr Prins
2016-04-20Introducing TEMPDIRpjotrp
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
2016-04-20Successful startup of GN2 with MySQLpjotrp
2016-04-20Remover dependency to logger_tree (may reintroduce later)pjotrp
2016-04-20[PATCH 018/100] Find external tools: refactored code to work with GNU GuixPjotr Prins
2016-04-20README: add URLpjotrp
2016-04-20* bin/genenetwork2: path handlingpjotrp
2016-04-20Removed import htmlgen as is not used (apparently)pjotrp
2016-04-20* ./bin/genenetwork2: New filepjotrp
2016-04-20Docs: Use ./doc dir instead of ./miscpjotrp
2016-04-20[PATCH 012/100] Adding configuration for running a default serverPjotr Prins
2016-04-20[PATCH 010/100] READMEPjotr Prins
2016-04-20DocsPjotr Prins
2016-04-18Additive effect lines are now separated by chromosome (like the qtl line in t......Fixed order of stats table in trait page Removed the qtl results table from chromosome view; will add the Interval Analyst output later zsloan
2016-04-14Fixed issue where qtl lines in interval mapping wouldn't connect between chro......Added text explaining what * indicates in the mapping options menu Removed ranges (log2 and fold) from stats table for phenotype traits zsloan
2016-04-13Moved the code getting the description/location because it was throwing an er...zsloan
2016-04-13Global search should be able to return description and location columns nowzsloan
2016-04-11Changed the way trait data is retrieved for the global search page (it now ge......This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line zsloan
2016-04-07Added option to change the maximum y-axis value for GN1 mapping figurezsloan
2016-04-07Permutation figure and x-axis label should change to correctly reflect the ma......Fixed bug where broken image link would appear if you ran R/qtl with no permutations zsloan
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