Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-04-29 | Run `sed -i 's/(object)//g'` | BonfaceKilz | |
See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g' | |||
2021-04-29 | base: trait: Remove unused function | BonfaceKilz | |
* wqflask/base/trait.py (jsonable_table_row): Delete it. | |||
2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
* wqflask/base/data_set.py (Dataset.get_accession_id): Delete it. | |||
2021-04-29 | base: data_set: Apply pep-8 | BonfaceKilz | |
2021-04-29 | base: data_set: Remove unused method | BonfaceKilz | |
* wqflask/base/data_set.py (riset): Delete class method. | |||
2021-04-29 | base: data_set: Rewrite data_set using @dataclass | BonfaceKilz | |
@dataclasses should be used to hold only data. Since dataset only encapsulates data, re-writing it using a dataclass makes it more readable and easier to follow. | |||
2021-04-29 | tests: test_data_set: Update test | BonfaceKilz | |
2021-04-29 | tests: unit: test_data_set: Remove unused mock | BonfaceKilz | |
2021-04-29 | wqflask: show_trait: Autopep-8 buffer | BonfaceKilz | |
2021-04-29 | wqflask: show_trait: Remove unused imports. | BonfaceKilz | |
* wqflask/wqflask/show_trait/show_trait.py: Delete unused imports. | |||
2021-04-29 | wqflask: Add new js file for processing menu entries | BonfaceKilz | |
* wqflask/wqflask/static/new/javascript/dataset_select_menu_edit_trait.js: New file. Copy of dataset_select_menu_orig.js that will later modified... * wqflask/wqflask/templates/edit_trait.html: Use :point_up:. | |||
2021-04-29 | templates: edit_trait.html: Trim form to only contain selection menu | BonfaceKilz | |
2021-04-29 | templates: edit_trait.html: Add extra fields for the form | BonfaceKilz | |
Add form elements for selecting group, type, and dataset. This mimics the home page. | |||
2021-04-29 | templates: edit_trait.html: Add comment headers | BonfaceKilz | |
The comment headers mark different sections. | |||
2021-04-29 | wqflask: views: Add new function for selecting a dataset | BonfaceKilz | |
* wqflask/wqflask/views.py(edit_trait_page): New function. | |||
2021-04-29 | templates: edit_trait.html: New file | BonfaceKilz | |
Copy of submit_trait.html. This is a copy; that'll form the basis of the new edit page. | |||
2021-04-29 | wqflask: views: Replace dict de-structuring with kw arguments | BonfaceKilz | |
* wqflask/wqflask/views.py (submit_trait_form): Use kw arguments when passing variables to the template. This is more readable. | |||
2021-04-28 | wqflask: views: Delete stale comments | BonfaceKilz | |
2021-04-28 | wqflask: views: Apply pep-8 | BonfaceKilz | |
2021-04-28 | Use right block level comments | BonfaceKilz | |
2021-04-28 | Remove stale comments | BonfaceKilz | |
2021-04-28 | Remove local variables that are unused | BonfaceKilz | |
2021-04-28 | wqflask: views: Remove news import | BonfaceKilz | |
This name clashes with "def news" which is defined later. | |||
2021-04-28 | wqflask: views.py: Clean up imports section | BonfaceKilz | |
Remove unused imports and break up long imports into shorter lines. | |||
2021-04-27 | templates: submit_trait.html: Add field for inputting trait name | BonfaceKilz | |
2021-04-23 | Remove stale comments | BonfaceKilz | |
2021-04-23 | Apply PEP-8 | BonfaceKilz | |
2021-04-23 | Rewrite For Loop in a more Pythonic way | BonfaceKilz | |
2021-04-23 | Rename index_page_orig to index_page | BonfaceKilz | |
2021-04-23 | Add full link to genetic data collected as part of WebQTL project | BonfaceKilz | |
2021-04-23 | Move looped sql query into one statement in "get_species_groups" | BonfaceKilz | |
It's in-efficient to have a sql query executed in a loop. As data grows, the query becomes slower. It's better to let sql handle such queries. | |||
2021-04-23 | Remove stale comments | BonfaceKilz | |
2021-04-14 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
2021-04-14 | Added JS that automatically selects the default collection if it's set | zsloan | |
2021-04-14 | Added option to set default collection to collections/view.html | zsloan | |
2021-04-13 | SQL notes - table layout | Pjotr Prins | |
2021-04-13 | SQL notes - table layout | Pjotr Prins | |
2021-04-13 | SQL notes | Pjotr Prins | |
2021-04-13 | SQL notes | Pjotr Prins | |
2021-04-09 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acenteno | Arthur Centeno | |
2021-04-09 | link to webinars | Arthur Centeno | |
2021-04-09 | Changed connditional in show_trait.js to check categorical_attr_exists ↵ | zsloan | |
instead of just checking if there are case attributes | |||
2021-04-09 | Replaced the conditional for whether to show 'Block samples by group' to ↵ | zsloan | |
instead check categorical_attr_exists | |||
2021-04-09 | Store categorical_attr_exists as a string instead of boolean since ↵ | zsloan | |
apparently the boolean doesn't get passed to the template properly | |||
2021-04-09 | Added varaiable 'categorical_attr_exists' tracking whether there are any ↵ | zsloan | |
case attributes with fewer than 10 distinct values, since it currently throws a JS error if case attributes exist but none have fewer than 10 distinct values (specifically when we have RRID as a case attribute) | |||
2021-03-30 | Shifted some code out of the try/except that shouldn't have been inside it | zsloan | |
2021-03-30 | Shifted the 'try' in a try/except up some to account for a possible error ↵ | zsloan | |
with calculating PCA that I don't know the cause of yet | |||
2021-03-29 | Changed minimum num_overlap to 2, since there apparently need to be that ↵ | zsloan | |
many shared samples torun scipy.stats.pearsonr/spearmanr | |||
2021-03-29 | Check if a trait in a collection is a properly structured string to avoid an ↵ | zsloan | |
error caused by an empty string be stored in a collection's trait list | |||
2021-03-26 | Split rat RRID by _ in order to pull out just the ID number, since the ↵ | zsloan | |
number is needed for the links |