diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/tests/wqflask/show_trait/test_export_trait_data.py | 62 |
1 files changed, 62 insertions, 0 deletions
diff --git a/wqflask/tests/wqflask/show_trait/test_export_trait_data.py b/wqflask/tests/wqflask/show_trait/test_export_trait_data.py index 98d599b1..488c9d63 100644 --- a/wqflask/tests/wqflask/show_trait/test_export_trait_data.py +++ b/wqflask/tests/wqflask/show_trait/test_export_trait_data.py @@ -1,10 +1,72 @@ import unittest +from unittest import mock from wqflask.show_trait.export_trait_data import dict_to_sorted_list from wqflask.show_trait.export_trait_data import cmp_samples +from wqflask.show_trait.export_trait_data import export_sample_table class TestExportTraits(unittest.TestCase): """Test methods related to converting dict to sortedlist""" + @mock.patch("wqflask.show_trait.export_trait_data.dict_to_sorted_list") + @mock.patch("wqflask.show_trait.export_trait_data.get_export_metadata") + def test_export_sample_table(self, exp_metadata, dict_list): + """test for exporting sample table""" + targs_obj = { + "export_data": """{ + "primary_samples": [ + { + "other": "germanotta", + "name": "Sauroniops", + "se":{ + "name":"S2" + }, + "num_cases":{ + "k1":"value" + + } + } + ], + "other_samples": [ + { + "se": 1, + "num_cases": 4, + "value": 6, + "name": 3 + } + ] + }""", + "trait_display_name": "Hair_color", + "trait_id": "23177fdc-312e-4084-ad0c-f3eae785fff5", + "dataset": { + } + } + exp_metadata.return_value = [ + ["Phenotype ID:0a2be192-57f5-400b-bbbd-0cf50135995f"], ['Group:gp1'], + ["Phenotype:p1"], [ + "Authors:N/A"], + ["Title:research1"], + ["Journal:N/A"], + ["Dataset Link: http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=name1"], []] + expected = ('Hair_color', + [['Phenotype ID:0a2be192-57f5-400b-bbbd-0cf50135995f'], + ['Group:gp1'], + ['Phenotype:p1'], + ['Authors:N/A'], + ['Title:research1'], + ['Journal:N/A'], + ['Dataset Link: ' + 'http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=name1'], + [], + ['Name', 'Value', 'SE', 'N'], + ['Sauroniops', 'germanotta'], + [3, 6, 1, 4]]) + + dict_list.side_effect = [['Sauroniops', 'germanotta'], [3, 6, 1, 4]] + + self.assertEqual(export_sample_table(targs_obj), expected) + exp_metadata.assert_called_with( + "23177fdc-312e-4084-ad0c-f3eae785fff5", {}) + self.assertEqual(dict_list.call_count, 2) def test_dict_to_sortedlist(self): """test for conversion of dict to sorted list""" |