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-rwxr-xr-xwqflask/wqflask/correlation/show_corr_results.py1
-rwxr-xr-xwqflask/wqflask/correlation_matrix/show_corr_matrix.py1
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingBody.py290
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfo.py146
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfoAddPage.py47
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfoDeletePage.py55
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfoEditPage.py51
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfoPage.py66
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingInfoUpdatePage.py109
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingListDataSetPage.py99
-rwxr-xr-xwqflask/wqflask/dataSharing/SharingPage.py40
-rwxr-xr-xwqflask/wqflask/dataSharing/__init__.py0
-rwxr-xr-xwqflask/wqflask/docs.py1
-rwxr-xr-xwqflask/wqflask/marker_regression/marker_regression.py2
-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py10
-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/lmm.py5
-rwxr-xr-xwqflask/wqflask/news.py16
-rwxr-xr-xwqflask/wqflask/show_trait/show_trait.py1
-rwxr-xr-xwqflask/wqflask/static/packages/bootstrap/css/docs.css13
-rwxr-xr-xwqflask/wqflask/templates/base.html15
-rwxr-xr-xwqflask/wqflask/templates/docedit.html (renamed from wqflask/wqflask/templates/testhtmleditor.html)8
-rwxr-xr-xwqflask/wqflask/templates/docs.html5
-rwxr-xr-xwqflask/wqflask/templates/index_page.html65
-rwxr-xr-xwqflask/wqflask/templates/news.html21
-rwxr-xr-xwqflask/wqflask/views.py50
-rwxr-xr-xwqflask/wqflask/yaml_data/whats_new.yaml26
26 files changed, 118 insertions, 1025 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index ade2d242..aa37c29e 100755
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -45,7 +45,6 @@ from utility.THCell import THCell
 from utility.TDCell import TDCell
 from base.trait import GeneralTrait
 from base import data_set
-from base.templatePage import templatePage
 from utility import webqtlUtil, helper_functions, corr_result_helpers
 from dbFunction import webqtlDatabaseFunction
 import utility.webqtlUtil #this is for parallel computing only.
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
index d734117e..e1df5b24 100755
--- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
+++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py
@@ -48,7 +48,6 @@ from utility.THCell import THCell
 from utility.TDCell import TDCell
 from base.trait import GeneralTrait
 from base import data_set
-from base.templatePage import templatePage
 from utility import webqtlUtil, helper_functions, corr_result_helpers
 from dbFunction import webqtlDatabaseFunction
 import utility.webqtlUtil #this is for parallel computing only.
diff --git a/wqflask/wqflask/dataSharing/SharingBody.py b/wqflask/wqflask/dataSharing/SharingBody.py
deleted file mode 100755
index 880161f5..00000000
--- a/wqflask/wqflask/dataSharing/SharingBody.py
+++ /dev/null
@@ -1,290 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-sharing_body_string = """
-<TD vAlign=top width="100%" align="left" height=10 bgColor=#eeeeee>
-
-                                                        <p style="font-size:18px;font-family:verdana;color:black"><B> Data Set Download</B></p>
-                                                        <Form METHOD="get" ACTION="/webqtl/main.py" name="SEARCHFORM">
-
-                                                                <TABLE width="800" border="0">
-
-                                        <!--  SPECIES  SELECTION -->
-                                                                        <TR>
-                                                                                <TD align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%">
-                                                                                        <B>Species:</B>
-                                                                                </TD>
-                                                                                <TD width="3%">
-                                                                                </TD>
-                                                                                <TD NOWRAP width="85%" align="left">
-                                                                                        <DIV Id="menu0">
-                                                                                                <Select NAME="species" size=1 id="species" onchange="fillOptions('species');">
-                                                                                                </Select>
-                                                                                        </DIV>
-                                                                                </TD>
-                                                                        </TR>
-
-                                        <!--  GROUP  SELECTION -->
-                                                                        <TR>
-                                                                                <TD align="right" height="35" style="font-size:14px;font-family:verdana;color:black">
-                                                                                        <B>Group:</B>
-                                                                                </TD>
-                                                                                <TD>
-                                                                                </TD>
-                                                                                <TD NOWRAP width="85%" align="left">
-                                                                                        <DIV Id="menu1">
-
-                                                                                                <Select NAME="cross" size=1 id="cross" onchange="fillOptions('cross');">
-                                                                                                </Select>
-                                                                                        <input type="button" class="button" value=" Info " onCLick="javascript:crossinfo();">
-                                                                                        </DIV>
-                                                                                </TD>
-                                                                        </TR>
-
-                                        <!--  TYPE  SELECTION -->
-                                                                        <TR>
-                                                                                <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black">
-                                                                                        <B>Type:</B>
-                                                                                </TD>
-                                                                                <TD>
-                                                                                </TD>
-                                                                                <TD NOWRAP width="85%" align="left">
-                                                                                        <DIV Id="menu2">
-                                                                                                <Select NAME="tissue" size=1 id="tissue" onchange="fillOptions('tissue');">
-
-                                                                                                </Select>
-                                                                                        </DIV>
-                                                                                </TD>
-                                                                        </TR>
-
-                                        <!--  DATABASE  SELECTION -->
-                                                                        <TR>
-                                                                                <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black">
-                                                                                        <B>Database:</B>
-                                                                                </TD>
-                                                                                <TD>
-                                                                                </TD>
-                                                                                <TD NOWRAP width="85%" align="left">
-                                                                                        <DIV Id="menu3">
-                                                                                                <Select NAME="database" size=1 id="database">
-                                                                                                </Select>
-                                                                                                <input type="button" class="button" value=" Info " onCLick="javascript:databaseinfo();">
-                                                                                        </DIV>
-                                                                                </TD>
-                                                                        </TR>
-
-<!--  SEARCH, MAKE DEFAULT, ADVANCED SEARCH -->
-                                                                        <TR>
-                                                                                <td></td>
-                                                                                <td></td>
-                                                                                <TD ALIGN="left" HEIGHT="40">
-                                                                                        &nbsp;&nbsp;&nbsp;<INPUT TYPE="button" CLASS="button" STYLE="font-size:12px" VALUE="&nbsp;&nbsp;Download&nbsp;&nbsp;" onCLick="javascript:datasetinfo();">
-                                                                                </TD>
-                                                                        </TR>
-                                                                </TABLE>
-
-                                                                <SCRIPT SRC="/javascript/selectDatasetMenu.js"></SCRIPT>
-                                                        </FORM>
-
-                                                        <p style="font-size:18px;font-family:verdana;color:black"><B> GeneNetwork Accession Number</B></p>
-                                                        <form method="get" action="/webqtl/main.py" name="f2" target="_blank">
-                                                                <INPUT TYPE="hidden" NAME="FormID" VALUE="sharinginfo">
-                                                                <TABLE width="800" border="0">
-                                                                        <tr>
-                                                                                <td align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"><b>GN:</b></td>
-                                                                                <td width=3%></td>
-                                                                                <td><input type="text" name="GN_AccessionId" size="40" />&nbsp;&nbsp;E.g. 112</td>
-                                                                        </tr>
-                                                                        <tr>
-                                                                                <td></td>
-                                                                                <td></td>
-                                                                                <td HEIGHT="40">
-                                                                                        &nbsp;&nbsp;&nbsp;<input type="Submit" class="button" STYLE="font-size:12px" VALUE="&nbsp;&nbsp;&nbsp;Submit&nbsp;&nbsp;&nbsp;">
-                                                                                </td>
-                                                                        </tr>
-                                                                </table>
-                                                        </form>
-
-</td>
-"""
-
-sharinginfo_body_string = """<td>
-<a href="/webqtl/main.py?FormID=sharingListDataset">List of DataSets</a><br>
-<H1 class="title" id="parent-fieldname-title">%s
-<a href="/webqtl/main.py?FormID=sharinginfoedit&GN_AccessionId=%s"><img src="/images/modify.gif" alt="modify this page" border="0" valign="middle"></a>
-<span style="color:red;">%s</span>
-</H1>
-<table border="0" width="100%%">
-<tr>
-<td valign="top" width="50%%">
-<TABLE cellSpacing=0 cellPadding=5 width=100%% border=0>
-                      <TR><td><b>GN Accession:</b> GN%s</TD></tr>
-                      <TR><TD><b>GEO Series:</b> %s</TD></TR>
-                      <TR><TD><b>Title:</b> %s</TD></TR>
-                      <TR><TD><b>Organism:</b> <a href=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s>%s</a></TD></tr>
-                      <tr><TD><b>Group:</b> %s</TD></TR>
-                      <TR><TD><b>Tissue:</b> %s</TD></tr>
-                      <tr><TD><b>Dataset Status:</b> %s</TD></tr>
-                      <TR><TD><b>Platforms:</b> %s</TD></TR>
-                      <TR><TD><b>Normalization:</b> %s</TD></TR>
-                      <TR><TD><!--Code below to Show hide Contact information -->
-                       <a href="#" onclick="colapse('answer1')">See Contact Information</a><br>
-                       <span id="answer1" style="display: none; return: false;">
-                                           %s<br>
-                       %s<br>
-                       %s<br>
-                       %s<br>
-                       %s, %s %s %s<br>
-                       Tel. %s<br>
-                       %s<br>
-                       <a href="%s">%s</a>
-                       </span><!--Code above to Show hide Contact information --></TD></TR>
-</TABLE>
-</td>
-<td valign="top" width="50%%">
-<table border="0" width="100%%">
-<tr>
-        <td bgcolor="#dce4e1"><b>Download datasets and supplementary data files</b></td>
-</tr>
-<tr>
-        <td>%s</td>
-</tr>
-</table>
-</td>
-</tr>
-</table>
-<HR>
-<p>
-<table width="100%%" border="0" cellpadding="5" cellspacing="0">
-<tr><td><span style="font-size:115%%;font-weight:bold;">Summary:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">About the cases used to generate this set of data:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">About the tissue used to generate this set of data:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">About downloading this data set:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">About the array platform:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">About data values and data processing:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Data source acknowledgment:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Experiment Type:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Overall Design:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Contributor:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Citation:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Submission Date:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Laboratory:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-<tr><td><span style="font-size:115%%;font-weight:bold;">Samples:</span></td></tr>
-        <tr><td> %s<br><br></td></tr>
-</table>
-</p>
-</td>
-"""
-
-sharinginfoedit_body_string = """<td>
-<H1 class="title">%s</H1>
-<script language="javascript">
-function CheckGNAccesionId(){
-        if (document.sharinginfoupdate.GN_AccesionId.value.length  ==  0){
-                alert("Please input GN Accesion Id");
-                document.sharinginfoupdate.GN_AccesionId.focus();
-                return false;
-        } else {
-                return true;
-        }
-}
-</script>
-<table border="0" CELLSPACING="0" CELLPADDING="8">
-<form name="sharinginfoupdate" method="post" action="/webqtl/main.py?FormID=sharinginfoupdate" onsubmit="return CheckGNAccesionId();">
-<input type="hidden" name="Id" value="%s">
-
-  <tr><TH COLSPAN=2><h2 class="title">Principal Investigator</h2></TH></tr>
-   <tr><td align="right" width="100"><b>Contact Name:</b></td><td width="200"><input type='text' name='Contact_Name' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Emails:</b></td><td><input type='text' name='Emails' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Phone:</b></td><td><input type='text' name='Phone' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>URL:</b></td><td><input type='text' name='URL' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Organization Name:</b></td><td><input type='text' name='Organization_Name' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Department:</b></td><td><input type='text' name='Department' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Laboratory:</b></td><td><input type='text' name='Laboratory' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Address:</b></td><td><input type='text' name='Street' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>City:</b></td><td><input type='text' name='City' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>State:</b></td><td><input type='text' name='State' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>ZIP:</b></td><td><input type='text' name='ZIP' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Country:</b></td><td><input type='text' name='Country' size='90' value='%s'></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Summary</h2></TH></tr>
-  <tr><td align="right"><b>Summary: </b></td><td><TEXTAREA NAME="Summary" cols="77" rows="15">%s</textarea></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Biology</h2></TH></tr>
-  <tr><td align="right"><b>Experiment Design:</b></td><td><TEXTAREA NAME="Experiment_Type" cols="77" rows="15">%s</textarea></td></tr>
-  <tr><td align="right"><b>About the cases used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Cases" cols="77" rows="15">%s</textarea></td></tr>
-  <tr><td align="right"><b>About the tissue used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Tissue" cols="77" rows="15">%s</textarea></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Technique</h2></TH></tr>
-  <tr><td align="right"><b>About downloading this data set:</b></td><td><TEXTAREA NAME="About_Download" cols="77" rows="15">%s</textarea></td></tr>
-  <tr><td align="right"><b>About the array platform:</b></td><td><TEXTAREA NAME="About_Array_Platform" cols="77" rows="15">%s</textarea></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Bioinformatics</h2></TH></tr>
-  <tr><td align="right"><b>About data values and<br>data processing:</b></td><td><TEXTAREA NAME="About_Data_Values_Processing" cols="77" rows="15">%s</textarea></td></tr>
-  <tr><td align="right"><b>Overall Design:</b></td><td><TEXTAREA NAME="Overall_Design" cols="77" rows="15">%s</textarea></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Misc</h2></TH></tr>
-  <tr><td align="right"><b>Contributor:</b></td><td><TEXTAREA NAME="Contributor" cols="77" rows="15">%s</textarea></td></tr>
-  <tr><td align="right"><b>Citation:</b></td><td><TEXTAREA NAME="Citation" cols="77" rows="5">%s</textarea></td></tr>
-  <tr><td align="right"><b>Data source acknowledgment:</b></td><td><TEXTAREA NAME="Data_Source_Acknowledge" cols="77" rows="15">%s</textarea></td></tr>
-
-  <tr><TH COLSPAN=2><h2 class="title">Administrator ONLY</h2></TH></tr>
-  <tr><td align="right"><b>GN Accesion Id:</b></td><td><input type='text' name='GN_AccesionId' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>DB Title in GN:</b></td><td><input type='text' name='InfoPageTitle' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>GEO Series:</b></td><td><input type='text' name='GEO_Series' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Status:</b></td><td><input type='text' name='Status' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Title:</b></td><td><input type='text' name='Title' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Organism_Id (Taxonomy ID):</b></td><td><input type='text' name='Organism_Id' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Organism:</b></td><td><input type='text' name='Organism' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Submission Date:</b></td><td><input type='text' name='Submission_Date' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Platforms:</b></td><td><input type='text' name='Platforms' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Species:</b></td><td><input type='text' name='Species' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Tissue:</b></td><td><input type='text' name='Tissue' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Normalization:</b></td><td><input type='text' name='Normalization' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Inbred Set:</b></td><td><input type='text' name='InbredSet' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Info Page Name:</b></td><td><input type='text' name='InfoPageName' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Samples:</b></td><td><input type='text' name='Samples' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Authorized Users:</b></td><td><input type='text' name='AuthorizedUsers' size='90' value='%s'></td></tr>
-   <tr><td align="right"><b>Progress:</b></td><td><input type='text' name='Progress' size='90' value='%s'></td></tr>
-
-  <tr><td> <colspan='2' align="center"><input type="Submit" class="button" style="font-size:12px" value="  Submit  "></td></tr>
-
-</form>
-</table>
-</td>"""
diff --git a/wqflask/wqflask/dataSharing/SharingInfo.py b/wqflask/wqflask/dataSharing/SharingInfo.py
deleted file mode 100755
index 41a75222..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfo.py
+++ /dev/null
@@ -1,146 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from __future__ import print_function, division
-
-from pprint import pformat as pf
-from collections import namedtuple
-
-import requests
-
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-
-#import logging
-#logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO)
-#
-#_log = logging.getLogger("search")
-#_ch = logging.StreamHandler()
-#_log.addHandler(_ch)
-
-
-
-#########################################
-#      Sharing Info
-#########################################
-class SharingInfo(object):
-
-    def __init__(self, GN_AccessionId, InfoPageName):
-        print("In SharingInfo")
-        self.GN_AccessionId = GN_AccessionId
-        self.InfoPageName = InfoPageName
-
-    def getInfo(self):
-        cursor = webqtlDatabaseFunction.getCursor()
-        if (not cursor):
-            return
-
-        field_names = """Id, GEO_Series, Status, Title, Organism, Experiment_Type,
-                Summary, Overall_Design, Contributor, Citation, Submission_Date,
-                Contact_Name, Emails, Phone, URL, Organization_Name, Department,
-                Laboratory, Street, City, State, ZIP, Country, Platforms,
-                Samples, Species, Normalization, InbredSet, InfoPageName,
-                DB_Name, Organism_Id, InfoPageTitle, GN_AccesionId, Tissue,
-                AuthorizedUsers, About_Cases, About_Tissue, About_Download,
-                About_Array_Platform, About_Data_Values_Processing,
-                Data_Source_Acknowledge, Progreso """
-
-        # We can use string interpolation here cause we own the string
-        sql = """select %s from InfoFiles where """ % (field_names)
-        if self.GN_AccessionId:
-            sql += "GN_AccesionId = %s"
-            cursor.execute(sql, self.GN_AccessionId)
-        elif self.InfoPageName:
-            sql += "InfoPageName = %s"
-            cursor.execute(sql, self.InfoPageName)
-        else:
-            raise Exception('No correct parameter found')
-        info = cursor.fetchone()
-
-        info = todict(field_names, info)
-
-        # fetch datasets file list
-        filelist = []
-        if info["GN_AccesionId"]:
-            url = "http://atlas.uthsc.edu/scandatasets.php?GN_AccesionId=%s" % (
-                info["GN_AccesionId"])
-            try:
-                response = requests.get(url)
-            except Exception as why:
-                log.exception("Problem conneting to:", url)
-            if response:
-                data = response.text
-                filelist = data.split()
-
-        return info, filelist
-
-
-    def getBody(self, infoupdate=""):
-        info, filelist = self.getInfo()
-        if filelist:
-            htmlfilelist = '<ul style="line-height:160%;">\n'
-            for i in range(len(filelist)):
-                if i%2==0:
-                    filename = filelist[i]
-                    filesize = filelist[i+1]
-                    htmlfilelist += "<li>"
-                    htmlfilelist += '<a href="ftp://atlas.uthsc.edu/users/shared/Genenetwork/GN%s/%s">%s</a>' % (self.GN_AccessionId, filename, filename)
-                    htmlfilelist += '&nbsp;&nbsp;&nbsp;'
-                    #r=re.compile(r'(?<=\d)(?=(\d\d\d)+(?!\d))')
-                    #htmlfilelist += '[%s&nbsp;B]' % r.sub(r',',filesize)
-                    if 12 < len(filesize):
-                        filesize=filesize[0:-12]
-                        filesize += ' T'
-                    elif 9 < len(filesize):
-                        filesize=filesize[0:-9]
-                        filesize += ' G'
-                    elif 6 < len(filesize):
-                        filesize=filesize[0:-6]
-                        filesize += ' M'
-                    elif 3 < len(filesize):
-                        filesize=filesize[0:-3]
-                        filesize += ' K'
-                    htmlfilelist += '[%sB]' % filesize
-                    htmlfilelist += "</li>\n"
-            htmlfilelist += "</ul>"
-        else:
-            htmlfilelist = "Data sets are not available or are not public yet."
-
-        return info, htmlfilelist
-        #return SharingBody.sharinginfo_body_string % (info[31], info[32], infoupdate, info[32], info[1], info[3], info[30], info[4], info[27], info[33], info[2], info[23], info[26], info[11], info[15], info[16], info[18], info[19], info[20], info[21], info[22], info[13], info[12], info[14], info[14], htmlfilelist, info[6], info[35], info[36], info[37], info[38], info[39], info[40], info[5], info[7], info[8], info[9], info[10], info[17], info[24])
-
-
-def todict(fields, values):
-    """Converts sql results into a user friendly dictionary"""
-    new_dict = {}
-    fields = fields.split(",")
-    for counter, field in enumerate(fields):
-        field = field.strip()
-        value = values[counter]
-        if isinstance(value, str):
-            value = unicode(value, "utf-8")
-        new_dict[field] = value
-    return new_dict
diff --git a/wqflask/wqflask/dataSharing/SharingInfoAddPage.py b/wqflask/wqflask/dataSharing/SharingInfoAddPage.py
deleted file mode 100755
index 452fb474..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfoAddPage.py
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-import SharingBody
-import SharingInfo
-
-
-#########################################
-#      Sharing Info Edit Page
-#########################################
-class SharingInfoAddPage(templatePage):
-
-    def __init__(self, fd=None):
-        templatePage.__init__(self, fd)
-        if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-            pass
-        else:
-            heading = "Adding Info"
-            detail = ["You don't have the permission to add new dataset"]
-            self.error(heading=heading,detail=detail,error="Error")
-            return
-        self.dict['body'] = SharingBody.sharinginfoedit_body_string % ("Add new dataset", "-1", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "", "")
diff --git a/wqflask/wqflask/dataSharing/SharingInfoDeletePage.py b/wqflask/wqflask/dataSharing/SharingInfoDeletePage.py
deleted file mode 100755
index a9c785c6..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfoDeletePage.py
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-import SharingInfo
-
-
-#########################################
-#      Sharing Info Delete Page
-#########################################
-class SharingInfoDeletePage(templatePage):
-
-    def __init__(self, fd=None):
-        templatePage.__init__(self, fd)
-        if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-            pass
-        else:
-            heading = "Deleting Info"
-            detail = ["You don't have the permission to delete this dataset"]
-            self.error(heading=heading,detail=detail,error="Error")
-            return
-        cursor = webqtlDatabaseFunction.getCursor()
-        if (not cursor):
-            return
-        GN_AccessionId = fd.formdata.getvalue('GN_AccessionId')
-        sql = "delete from InfoFiles where GN_AccesionId=%s"
-        cursor.execute(sql, GN_AccessionId)
-        re = cursor.fetchone()
-        self.dict['body'] = "Delete dataset info record (GN_AccesionId=%s) successfully." % GN_AccessionId
diff --git a/wqflask/wqflask/dataSharing/SharingInfoEditPage.py b/wqflask/wqflask/dataSharing/SharingInfoEditPage.py
deleted file mode 100755
index c5f4ed22..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfoEditPage.py
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-import SharingBody
-import SharingInfo
-
-
-#########################################
-#      Sharing Info Edit Page
-#########################################
-class SharingInfoEditPage(templatePage):
-
-    def __init__(self, fd=None):
-        templatePage.__init__(self, fd)
-        if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-            pass
-        else:
-            heading = "Editing Info"
-            detail = ["You don't have the permission to edit this dataset"]
-            self.error(heading=heading,detail=detail,error="Error")
-            return
-        GN_AccessionId = fd.formdata.getvalue('GN_AccessionId')
-        InfoPageName = fd.formdata.getvalue('InfoPageName')
-        sharingInfoObject = SharingInfo.SharingInfo(GN_AccessionId, InfoPageName)
-        info, filelist = sharingInfoObject.getInfo()
-        self.dict['body'] = SharingBody.sharinginfoedit_body_string % (info[31], info[0], info[11], info[12], info[13], info[14], info[15], info[16], info[17], info[18], info[19], info[20], info[21], info[22], info[6], info[5], info[35], info[36], info[37], info[38], info[39], info[7], info[8], info[9], info[40], info[32], info[31], info[1], info[2], info[3], info[30], info[4], info[10], info[23], info[25], info[33], info[26], info[27], info[28], info[24], info[34], info[41])
diff --git a/wqflask/wqflask/dataSharing/SharingInfoPage.py b/wqflask/wqflask/dataSharing/SharingInfoPage.py
deleted file mode 100755
index 7ad44440..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfoPage.py
+++ /dev/null
@@ -1,66 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from __future__ import print_function, division
-
-from pprint import pformat as pf
-
-import urlparse
-
-import flask
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-import SharingInfo
-
-
-#########################################
-#      Sharing Info Page
-#########################################
-class SharingInfoPage(templatePage):
-
-    def __init__(self, fd):
-        templatePage.__init__(self, fd)
-        self.redirect_url = None   # Set if you want a redirect
-        print("fd is:", pf(fd.__dict__))
-        # Todo: Need a [0] in line below????d
-        GN_AccessionId = fd.get('GN_AccessionId')   # Used under search datasharing
-        InfoPageName = fd.get('database')  # Might need to add a [0]
-        cursor = webqtlDatabaseFunction.getCursor()
-        if InfoPageName and not GN_AccessionId:
-            sql = "select GN_AccesionId from InfoFiles where InfoPageName = %s"
-            cursor.execute(sql, InfoPageName)
-            GN_AccessionId = cursor.fetchone()
-            self.redirect_url = urlparse.urljoin(webqtlConfig.ROOT_URL, "/data_sharing?GN_AccessionId=%s" % GN_AccessionId)
-            #self.redirect_url = flask.url_for('data_sharing', GN_AccessionId=GN_AccessionId[0])
-            print("set self.redirect_url")
-            #print("before redirect")
-            #return flask.redirect(url)
-            #print("after redirect")
-        else:
-            CauseError
diff --git a/wqflask/wqflask/dataSharing/SharingInfoUpdatePage.py b/wqflask/wqflask/dataSharing/SharingInfoUpdatePage.py
deleted file mode 100755
index 181f2eed..00000000
--- a/wqflask/wqflask/dataSharing/SharingInfoUpdatePage.py
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-import MySQLdb
-
-from base.templatePage import templatePage
-from base import webqtlConfig
-from dbFunction import webqtlDatabaseFunction
-import SharingBody
-import SharingInfo
-
-#########################################
-#      Sharing Info Update Page
-#########################################
-class SharingInfoUpdatePage(templatePage):
-
-    def __init__(self, fd=None):
-        templatePage.__init__(self, fd)
-        if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-            pass
-        else:
-            heading = "Editing Info"
-            detail = ["You don't have the permission to modify this file"]
-            self.error(heading=heading,detail=detail,error="Error")
-            return
-        cursor = webqtlDatabaseFunction.getCursor()
-        if (not cursor):
-            return
-        Id=fd.formdata.getvalue('Id')
-        GN_AccesionId=fd.formdata.getvalue('GN_AccesionId')
-        GEO_Series=fd.formdata.getvalue('GEO_Series')
-        Status=fd.formdata.getvalue('Status')
-        Title=fd.formdata.getvalue('Title')
-        Organism_Id=fd.formdata.getvalue('Organism_Id')
-        Organism=fd.formdata.getvalue('Organism')
-        Experiment_Type =fd.formdata.getvalue('Experiment_Type')
-        Summary=fd.formdata.getvalue('Summary')
-        Overall_Design=fd.formdata.getvalue('Overall_Design')
-        Contributor=fd.formdata.getvalue('Contributor')
-        Citation=fd.formdata.getvalue('Citation')
-        Submission_Date=fd.formdata.getvalue('Submission_Date')
-        Contact_Name=fd.formdata.getvalue('Contact_Name')
-        Emails=fd.formdata.getvalue('Emails')
-        Phone=fd.formdata.getvalue('Phone')
-        URL=fd.formdata.getvalue('URL')
-        Organization_Name=fd.formdata.getvalue('Organization_Name')
-        Department=fd.formdata.getvalue('Department')
-        Laboratory=fd.formdata.getvalue('Laboratory')
-        Street=fd.formdata.getvalue('Street')
-        City=fd.formdata.getvalue('City')
-        State=fd.formdata.getvalue('State')
-        ZIP=fd.formdata.getvalue('ZIP')
-        Country=fd.formdata.getvalue('Country')
-        Platforms=fd.formdata.getvalue('Platforms')
-        Samples=fd.formdata.getvalue('Samples')
-        Species=fd.formdata.getvalue('Species')
-        Tissue=fd.formdata.getvalue('Tissue')
-        Normalization=fd.formdata.getvalue('Normalization')
-        InbredSet=fd.formdata.getvalue('InbredSet')
-        InfoPageName=fd.formdata.getvalue('InfoPageName')
-        InfoPageTitle=fd.formdata.getvalue('InfoPageTitle')
-        About_Cases=fd.formdata.getvalue('About_Cases')
-        About_Tissue=fd.formdata.getvalue('About_Tissue')
-        About_Download=fd.formdata.getvalue('About_Download')
-        About_Array_Platform=fd.formdata.getvalue('About_Array_Platform')
-        About_Data_Values_Processing=fd.formdata.getvalue('About_Data_Values_Processing')
-        Data_Source_Acknowledge=fd.formdata.getvalue('Data_Source_Acknowledge')
-        AuthorizedUsers=fd.formdata.getvalue('AuthorizedUsers')
-        Progress=fd.formdata.getvalue('Progress')
-        if Id=='-1':
-            sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
-            info, filelist = sharingInfoObject.getInfo()
-            if info:
-                heading = "Editing Info"
-                detail = ["The new dataset info record is duplicate."]
-                self.error(heading=heading, detail=detail, error="Error")
-                return
-            sql = """INSERT INTO InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s"""
-            cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress]))
-            infoupdate="This record has been succesfully added."
-        else:
-            sql = """UPDATE InfoFiles SET GN_AccesionId=%s, GEO_Series=%s, Status=%s, Title=%s, Organism_Id=%s, Organism=%s, Experiment_Type=%s, Summary=%s, Overall_Design=%s, Contributor=%s, Citation=%s, Submission_Date=%s, Contact_Name=%s, Emails=%s, Phone=%s, URL=%s, Organization_Name=%s, Department=%s, Laboratory=%s, Street=%s, City=%s, State=%s, ZIP=%s, Country=%s, Platforms=%s, Samples=%s, Species=%s, Tissue=%s, Normalization=%s, InbredSet=%s, InfoPageName=%s, InfoPageTitle=%s, About_Cases=%s, About_Tissue=%s, About_Download=%s, About_Array_Platform=%s, About_Data_Values_Processing=%s, Data_Source_Acknowledge=%s, AuthorizedUsers=%s, Progreso=%s WHERE Id=%s"""
-            cursor.execute(sql, tuple([GN_AccesionId, GEO_Series, Status, Title, Organism_Id, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Tissue, Normalization, InbredSet, InfoPageName, InfoPageTitle, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, AuthorizedUsers, Progress, Id]))
-            infoupdate="This record has been succesfully updated."
-        sharingInfoObject = SharingInfo.SharingInfo(GN_AccesionId, InfoPageName)
-        self.dict['body'] = sharingInfoObject.getBody(infoupdate=infoupdate)
diff --git a/wqflask/wqflask/dataSharing/SharingListDataSetPage.py b/wqflask/wqflask/dataSharing/SharingListDataSetPage.py
deleted file mode 100755
index 8685ac65..00000000
--- a/wqflask/wqflask/dataSharing/SharingListDataSetPage.py
+++ /dev/null
@@ -1,99 +0,0 @@
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from htmlgen import HTMLgen2 as HT
-from base import webqtlConfig
-
-from base.templatePage import templatePage
-
-
-#########################################
-#      Sharing List DataSet Page
-#########################################
-class SharingListDataSetPage(templatePage):
-
-    def __init__(self, fd=None):
-        templatePage.__init__(self, fd)
-
-        if not self.openMysql():
-            return
-
-        if webqtlConfig.USERDICT[self.privilege] >= webqtlConfig.USERDICT['admin']:
-            pass
-        else:
-            heading = "Editing Info"
-            detail = ["You don't have the permission to list the datasets"]
-            self.error(heading=heading,detail=detail,error="Error")
-            return
-
-
-        TD_LR = HT.TD(height=200,width="100%",bgColor='#eeeeee')
-
-        query = """select GN_AccesionId, InfoPageTitle, Progreso from InfoFiles order by GN_AccesionId"""
-        self.cursor.execute(query)
-        result = self.cursor.fetchall()
-
-        heading = HT.Paragraph('Dataset Table', Class="title")
-
-        newrecord = HT.Href(text="New Record", url="/webqtl/main.py?FormID=sharinginfoadd")
-
-        info = "Click the accession id to view the dataset info. Click the dataset name to edit the dataset info."
-
-        datasetTable = HT.TableLite(border=0, cellpadding=0, cellspacing=0, Class="collap", width="100%")
-
-        tableHeaderRow = HT.TR()
-        tableHeaderRow.append(HT.TD("Accession Id", Class='fs14 fwb ffl b1 cw cbrb', align="center"))
-        tableHeaderRow.append(HT.TD("Dataset name", Class='fs14 fwb ffl b1 cw cbrb', align="center"))
-        tableHeaderRow.append(HT.TD("Progress", Class='fs14 fwb ffl b1 cw cbrb', align="center"))
-        tableHeaderRow.append(HT.TD("Operation", Class='fs14 fwb ffl b1 cw cbrb', align="center"))
-        datasetTable.append(tableHeaderRow)
-
-        for one_row in result:
-            Accession_Id, InfoPage_title, Progress = one_row
-            datasetRow = HT.TR()
-            datasetRow.append(HT.TD(HT.Href(text="GN%s" % Accession_Id, url="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=%s" % Accession_Id, Class='fs12 fwn'), Class="fs12 fwn b1 c222"))
-            datasetRow.append(HT.TD(HT.Href(text="%s" % InfoPage_title, url="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=%s" % Accession_Id, Class='fs12 fwn'), Class="fs12 fwn b1 c222"))
-            datasetRow.append(HT.TD("%s" % Progress, Class='fs12 fwn ffl b1 c222'))
-            operation_edit = HT.Href(text="Edit", url="/webqtl/main.py?FormID=sharinginfoedit&GN_AccessionId=%s" % Accession_Id)
-            operation_delete = HT.Href(text="Delete", onClick="deleteRecord(%s); return false;" % Accession_Id)
-            operation = HT.TD(Class="fs12 fwn b1 c222", align="center")
-            operation.append(operation_edit)
-            operation.append("&nbsp;&nbsp;&nbsp;&nbsp;")
-            operation.append(operation_delete)
-            datasetRow.append(operation)
-            datasetTable.append(datasetRow)
-
-        TD_LR.append(heading, HT.P(), newrecord, HT.P(), info, HT.P(), datasetTable)
-
-        js1 = """       <script language="javascript" type="text/javascript">
-                                        function deleteRecord(id){
-                                                question = confirm("Are you sure you want to delete the dataset info record (Accession Id="+id+")?")
-                                                if (question != "0"){
-                                                        window.open("/webqtl/main.py?FormID=sharinginfodelete&GN_AccessionId="+id, "_self");
-                                                }
-                                        }
-                                        </script>"""
-        self.dict['js1'] = js1
-        self.dict['body'] =  str(TD_LR)
diff --git a/wqflask/wqflask/dataSharing/SharingPage.py b/wqflask/wqflask/dataSharing/SharingPage.py
deleted file mode 100755
index b244a6bd..00000000
--- a/wqflask/wqflask/dataSharing/SharingPage.py
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-from base.templatePage import templatePage
-import SharingBody
-
-#########################################
-#      SharingPage
-#########################################
-
-class SharingPage(templatePage):
-
-    def __init__(self, fd):
-        templatePage.__init__(self, fd)
-        self.dict['title'] = 'GeneNetwork Data Sharing Zone'
-        self.dict['body'] = SharingBody.sharing_body_string
-        self.dict['js2'] = 'onload="javascript:initialDatasetSelection();"'
diff --git a/wqflask/wqflask/dataSharing/__init__.py b/wqflask/wqflask/dataSharing/__init__.py
deleted file mode 100755
index e69de29b..00000000
--- a/wqflask/wqflask/dataSharing/__init__.py
+++ /dev/null
diff --git a/wqflask/wqflask/docs.py b/wqflask/wqflask/docs.py
index 65255987..07b0b81a 100755
--- a/wqflask/wqflask/docs.py
+++ b/wqflask/wqflask/docs.py
@@ -11,5 +11,6 @@ class Docs(object):
             WHERE Docs.entry LIKE '%s'
             """
         result = g.db.execute(sql % (entry)).fetchone()
+        self.entry = entry
         self.title = result[0]
         self.content = result[1]
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py
index 3fb9915b..7708356b 100755
--- a/wqflask/wqflask/marker_regression/marker_regression.py
+++ b/wqflask/wqflask/marker_regression/marker_regression.py
@@ -701,7 +701,7 @@ class MarkerRegression(object):
             no_val_samples = self.identify_empty_samples()
             trimmed_genotype_data = self.trim_genotypes(genotype_data, no_val_samples)
             
-            genotype_matrix = np.array(trimmed_genotype_data).T
+            genotype_matrix = np.array(genotype_data).T
 
             #print("pheno_vector: ", pf(pheno_vector))
             #print("genotype_matrix: ", pf(genotype_matrix))
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index 3b6b5d70..4312fed0 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -1,5 +1,5 @@
-# This is a converter for common LMM formats, so as to keep complexity
-# outside the main routines. 
+# This is a converter for common LMM formats, so as to keep file
+# reader complexity outside the main routines.
 
 # Copyright (C) 2015  Pjotr Prins (pjotr.prins@thebird.nl)
 #
@@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen
   Convert files for runlmm.py processing. Writes to stdout by default.
 
   try --help for more information
+
+Examples:
+
+  python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno
+
+  python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno
 """
 
 # if len(args) == 0:
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
index 6f03eaf7..b2067b27 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py
@@ -43,13 +43,14 @@ Redis = Redis()
 
 import sys
 sys.path.append("/home/zas1024/gene/wqflask/")
-sys.path.append("/home/danny/GeneNetwork/wqflask/wqflask/my_pylmm/pyLMM/")
-print("sys.path2:", sys.path)
 
 has_gn2=True
 
 from utility.benchmark import Bench
 from utility import temp_data
+
+sys.path.append("/home/zas1024/gene/wqflask/wqflask/my_pylmm/pyLMM/")
+
 from kinship import kinship, kinship_full, kvakve
 import genotype
 import phenotype
diff --git a/wqflask/wqflask/news.py b/wqflask/wqflask/news.py
new file mode 100755
index 00000000..62dc1bbb
--- /dev/null
+++ b/wqflask/wqflask/news.py
@@ -0,0 +1,16 @@
+from __future__ import absolute_import, print_function, division
+import sys  
+reload(sys)  
+sys.setdefaultencoding('utf8')
+from flask import g
+
+class News(object):
+
+    def __init__(self):
+        sql = """
+            SELECT News.id, News.date, News.details
+            FROM News
+			order by News.date desc
+            """
+        self.title = "GeneNetwork News"
+        self.newslist = g.db.execute(sql).fetchall()
diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py
index 11fd2644..929f5abb 100755
--- a/wqflask/wqflask/show_trait/show_trait.py
+++ b/wqflask/wqflask/show_trait/show_trait.py
@@ -19,7 +19,6 @@ from utility import webqtlUtil, Plot, Bunch, helper_functions
 from base.trait import GeneralTrait
 from base import data_set
 from dbFunction import webqtlDatabaseFunction
-from base.templatePage import templatePage
 from basicStatistics import BasicStatisticsFunctions
 
 from pprint import pformat as pf
diff --git a/wqflask/wqflask/static/packages/bootstrap/css/docs.css b/wqflask/wqflask/static/packages/bootstrap/css/docs.css
index b95c44ed..2d6a713c 100755
--- a/wqflask/wqflask/static/packages/bootstrap/css/docs.css
+++ b/wqflask/wqflask/static/packages/bootstrap/css/docs.css
@@ -25,25 +25,28 @@ h3 code {
 
 /* Tweak navbar brand link to be super sleek
 -------------------------------------------------- */
-
+/*
 body > .navbar {
   font-size: 12px;
   font-weight: bold;
 }
+*/
 
 /* Change the docs' brand */
-body > .navbar .brand {
-  padding-right: 0;
-  padding-left: 0;
+
+body > .navbar .navbar-brand {
+  padding-right: 20px;
+  padding-left: 20px;
   margin-left: 20px;
   float: left;
   font-weight: bold;
-  color: #336699;
+  color: #ffffff;
   text-shadow: 0 1px 0 rgba(255,255,255,.1), 0 0 30px rgba(255,255,255,.125);
   -webkit-transition: all .2s linear;
      -moz-transition: all .2s linear;
           transition: all .2s linear;
 }
+
 body > .navbar .brand:hover {
   text-decoration: none;
   text-shadow: 0 1px 0 rgba(255,255,255,.1), 0 0 30px rgba(255,255,255,.4);
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index 3d4e6d28..462a59a2 100755
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -74,6 +74,13 @@
                             <a href="/">Search</a>
                         </li>
                         <li class="">
+                            <a href="/collections/list">Collections
+                                {% if g.user_session.user_ob %}
+                                <span class="badge badge-info">{{ g.user_session.user_ob.display_num_collections() }}</span>
+                                {% endif %}
+                            </a>
+                        </li>
+                        <li class="">
                             <a href="/help">Help</a>
                         </li>
                         <li class="">
@@ -92,14 +99,6 @@
                             <a href="/environments">Environments</a>
                         </li>
                         <li class="">
-                            <a href="/collections/list">Collections
-                                {% if g.user_session.user_ob %}
-                                <span class="badge badge-info">{{ g.user_session.user_ob.display_num_collections() }}</span>
-                                {% endif %}
-                            </a>
-                        </li>
-
-                        <li class="">
                             {% if g.user_session.logged_in %}
                             <a id="login_out" title="Signed in as {{ g.user_session.user_ob.name_and_org }}." href="/n/logout">Sign out</a>
                             {% else %}
diff --git a/wqflask/wqflask/templates/testhtmleditor.html b/wqflask/wqflask/templates/docedit.html
index 1d258d0e..1a9e8ca8 100755
--- a/wqflask/wqflask/templates/testhtmleditor.html
+++ b/wqflask/wqflask/templates/docedit.html
@@ -1,18 +1,18 @@
 {% extends "base.html" %}
 
-{% block title %}Test html editor{% endblock %}
+{% block title %}Edit: {{title}}{% endblock %}
 
 {% block content %}
 <div class="container">
-    <h2>Test HTML Editor</h2>
+    <h3>Edit: {{title}}</h3>
     <form>
         <textarea name="ckcontent" id="ckcontent">
-        Test HTML
+			{{content|safe}}
         </textarea>
         <script type="text/javascript" src="/static/packages/ckeditor/ckeditor.js"></script>
         <script type="text/javascript">
             CKEDITOR.replace('ckcontent',	{
-                height: '500px',
+                height: '650px',
             });
         </script>
     </form>
diff --git a/wqflask/wqflask/templates/docs.html b/wqflask/wqflask/templates/docs.html
index cbaf1e70..08f95721 100755
--- a/wqflask/wqflask/templates/docs.html
+++ b/wqflask/wqflask/templates/docs.html
@@ -5,6 +5,11 @@
 {% block content %}
 <div class="container">
 	<h3>{{title}}</h3>
+	<div style="text-align: right;">
+		<a href="docedit?entry={{entry}}">
+			<img style="width: 25px;" src="/static/images/edit.png">
+		</a>
+	</div>
 	{{content|safe}}
 </div>
 {% endblock %}
diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html
index 538a6799..5e0a92e3 100755
--- a/wqflask/wqflask/templates/index_page.html
+++ b/wqflask/wqflask/templates/index_page.html
@@ -29,19 +29,19 @@
 
                                 <div class="form-group">
                                     <label for="species" class="col-xs-1 control-label" style="width: 65px !important;">Species:</label>
-                                    <div class="col-xs-10 controls">
+                                    <div class="col-xs-10 controls input-append" style="padding-right: 0px;">
                                         <div class="col-xs-8">
                                           <select name="species" id="species" class="form-control selectpicker span3" style="width: 280px !important;"></select>
                                         </div>
                                         <div class="col-xs-4">
-                                          <input id="make_default" class="btn btn-default form-control" value="Make Default">
+                                          <input id="make_default" class="btn btn-primary form-control" value="Make Default">
                                         </div>
                                     </div>
                                 </div>
 
                                 <div class="form-group">
                                     <label for="group" class="col-xs-1 control-label" style="width: 65px !important;">Group:</label>
-                                    <div class="col-xs-4 controls input-append">
+                                    <div class="col-xs-10 controls input-append">
                                         <div class="col-xs-8">
                                           <select name="group" id="group" class="form-control selectpicker span3" style="width: 280px !important;"></select>
                                           <i class="icon-question-sign"></i>
@@ -51,7 +51,7 @@
 
                                 <div class="form-group">
                                     <label for="tissue" class="col-xs-1 control-label" style="width: 65px !important;">Type:</label>
-                                    <div class="col-xs-4 controls">
+                                    <div class="col-xs-10 controls">
                                         <div class="col-xs-8">
                                           <select name="type" id="type" class="form-control selectpicker span3" style="width: 280px !important;"></select>
                                         </div>
@@ -60,7 +60,7 @@
 
                                 <div class="form-group">
                                     <label for="dataset" class="col-xs-1 control-label" style="width: 65px !important;">Dataset:</label>
-                                    <div class="col-xs-4 controls input-append">
+                                    <div class="col-xs-10 controls input-append">
                                         <div class="col-xs-8">
                                           <select name="dataset" id="dataset" class="form-control selectpicker span5" style="width: 450px !important;"></select>
                                           <i class="icon-question-sign"></i>
@@ -86,15 +86,15 @@
 
                                 <!--  GET ANY HELP   -->
                                 <div class="form-group">
-                                    <label for="tfor" class="col-xs-1 control-label" style="width: 65px !important;"></label>
+                                    <label for="btsearch" class="col-xs-1 control-label" style="width: 65px !important;"></label>
                                     <div class="col-xs-10 controls">
-                                        <div class="col-xs-10">
-                                          <p>Enter terms, genes, ID numbers in the
-                                             <b>Search</b> field<br>
-                                             Use <b>*</b> or <b>?</b> wildcards (Cyp*a?,
-                                             synap*)<br>
-                                             Use <b>quotes</b> for terms such as <i>"tyrosine
-                                             kinase"</i></p>
+                                        <div class="col-xs-2 controls" style="width: 100px !important;">
+                                            <input id="btsearch" type="submit" class="btn btn-primary form-control" value="Search">
+                                        </div>                                    
+                                        <div class="col-xs-9 controls">
+                                            Enter terms, genes, ID numbers in the <b>Search</b> field
+                                            Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*)
+                                            Use <b>quotes</b> for terms such as <i>"tyrosine kinase"</i>
                                         </div>
                                     </div>
                                 </div>
@@ -103,10 +103,6 @@
                                 <!--  SEARCH, MAKE DEFAULT -->
 
                                 <div class="form-group">
-
-                                    <div class="col-xs-3 controls" style="width: 100px !important;">
-                                        <input id="btsearch" type="submit" class="btn btn-primary form-control" value="Search">
-                                    </div>
                                 </div>
 
                                 <input type="hidden" name="FormID" value="searchResult" class="form-control">
@@ -159,7 +155,7 @@
                       </ul>
                 </section>
             </div>
-            <div style="padding-left:120px" class="col-xs-6" style="width: 600px !important;">
+            <div style="padding-left:120px" class="col-xs-4" style="width: 600px !important;">
                 <!--
                 <section id="tour-info">
                     <div class="page-header">
@@ -207,32 +203,15 @@
 
                         <li>GeneNetwork Source Code at <a href="https://github.com/genenetwork/genenetwork" target="_blank">GitHub</a></li>
                     </ul>
-                    <h3>Mirror and development sites</h3>
-                    <ul>
-                        <li><a href="http://www.genenetwork.org/" target="_blank">
-                        Main GN site</a> at UTHSC</li>
-
-                        <li><a href="http://www.genenetwork.waimr.uwa.edu.au/" target="_blank">
-                        Australia</a> at the UWA</li>
+                    <h3>GN1 Mirror and development sites</h3>
 
-                        <li><a href="http://gn.genetics.ucla.edu/" target="_blank">
-                        California</a> at UCLA</li>
-
-                        <li><a href="http://genenetwork.helmholtz-hzi.de/" target="_blank">
-                        Germany</a> at the HZI</li>
-
-                        <li><a href="https://genenetwork.hubrecht.eu/" target="_blank">
-                        Netherlands</a> at the Hubrecht
-                        (development)</li>
-
-                        <li><a href="http://genenetwork.memphis.edu/" target="_blank">
-                        Memphis</a> at the U of M</li>
-
-                        <li><a href="http://webqtl.bic.nus.edu.sg/" target="_blank">
-                        Singapore</a> at the NUS</li>
-
-                        <li><a href="http://genenetwork.epfl.ch/" target="_blank">
-                        Switzerland</a> at the EPFL</li>
+                    <ul>
+                        <li><a href="http://www.genenetwork.org/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">Main GN1 site at UTHSC</a> (main site)</li>
+                        <li><a href="http://www.genenetwork.waimr.uwa.edu.au/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">Australia at the UWA</a></li>
+                        <li><a href="http://gn.genetics.ucla.edu/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">California at UCLA</a></li>
+                        <li><a href="http://genenetwork.helmholtz-hzi.de/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">Germany at the HZI</a></li>
+                        <li><a href="http://genenetwork.memphis.edu/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">Memphis at the U of M</a></li>
+                        <li><a href="http://genenetwork.epfl.ch/" target="_blank" style="font-size:12px;font-family:verdana;color:blue">Switzerland at the EPFL</a></li>
                     </ul>
                 </section>
 
diff --git a/wqflask/wqflask/templates/news.html b/wqflask/wqflask/templates/news.html
new file mode 100755
index 00000000..4f0032b8
--- /dev/null
+++ b/wqflask/wqflask/templates/news.html
@@ -0,0 +1,21 @@
+{% extends "base.html" %}
+
+{% block title %}{{title}}{% endblock %}
+
+{% block content %}
+<div class="container">
+	<h3>{{title}}</h3>
+	<table class="table table-hover table-striped" style="width: 600px;">
+		<tbody>
+		{% for newsitem in newslist %}
+			<tr>
+				<td style="width: 90px; text-wrap:none;" nowrap>
+					<span style="font-weight: bold;">{{newsitem.date}}</span>
+				</td>
+				<td>{{newsitem.details|safe}}</td>
+			</tr>
+		{% endfor %}
+		</tbody>
+	</table>
+</div>
+{% endblock %}
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 7fec0456..39004f07 100755
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -33,6 +33,7 @@ from flask import (render_template, request, make_response, Response,
 
 from wqflask import search_results
 from wqflask import docs
+from wqflask import news
 from base.data_set import DataSet    # Used by YAML in marker_regression
 from base.data_set import create_datasets_list
 from wqflask.show_trait import show_trait
@@ -45,8 +46,6 @@ from wqflask.correlation_matrix import show_corr_matrix
 from wqflask.correlation import corr_scatter_plot
 from utility import temp_data
 
-from wqflask.dataSharing import SharingInfo, SharingInfoPage
-
 from base import webqtlFormData
 from utility.benchmark import Bench
 
@@ -100,20 +99,20 @@ def tmp_page(img_path):
                             img_base64 = bytesarray )
 
 
-@app.route("/data_sharing")
-def data_sharing_page():
-    print("In data_sharing")
-    fd = webqtlFormData.webqtlFormData(request.args)
-    print("1Have fd")
-    sharingInfoObject = SharingInfo.SharingInfo(request.args['GN_AccessionId'], None)
-    info, htmlfilelist = sharingInfoObject.getBody(infoupdate="")
-    print("type(htmlfilelist):", type(htmlfilelist))
-    htmlfilelist = htmlfilelist.encode("utf-8")
-    #template_vars = SharingInfo.SharingInfo(request.args['GN_AccessionId'], None)
-    print("1 Made it to rendering")
-    return render_template("data_sharing.html",
-                            info=info,
-                            htmlfilelist=htmlfilelist)
+#@app.route("/data_sharing")
+#def data_sharing_page():
+#    print("In data_sharing")
+#    fd = webqtlFormData.webqtlFormData(request.args)
+#    print("1Have fd")
+#    sharingInfoObject = SharingInfo.SharingInfo(request.args['GN_AccessionId'], None)
+#    info, htmlfilelist = sharingInfoObject.getBody(infoupdate="")
+#    print("type(htmlfilelist):", type(htmlfilelist))
+#    htmlfilelist = htmlfilelist.encode("utf-8")
+#    #template_vars = SharingInfo.SharingInfo(request.args['GN_AccessionId'], None)
+#    print("1 Made it to rendering")
+#    return render_template("data_sharing.html",
+#                            info=info,
+#                            htmlfilelist=htmlfilelist)
 
 
 @app.route("/search", methods=('GET',))
@@ -152,9 +151,10 @@ def search_page():
         else:
             return render_template("search_result_page.html", **result)
 
-@app.route("/testhtmleditor")
-def testhtmleditor_page():
-    return render_template("testhtmleditor.html")
+@app.route("/docedit")
+def docedit():
+    doc = docs.Docs(request.args['entry'])
+    return render_template("docedit.html", **doc.__dict__)
 
 @app.route("/help")
 def help():
@@ -162,15 +162,9 @@ def help():
     return render_template("docs.html", **doc.__dict__)
 
 @app.route("/news")
-def news():
-    #variables = whats_new.whats_new()
-    with open("/home/sam/gene/wqflask/wqflask/yaml_data/whats_new.yaml") as fh:
-        contents = fh.read()
-        yamilized = yaml.safe_load(contents)
-        news_items = yamilized['news']
-    for news_item in news_items:
-        print("\nnews_item is: %s\n" % (news_item))
-    return render_template("whats_new.html", news_items=news_items)
+def news_route():
+    newsobject = news.News()
+    return render_template("news.html", **newsobject.__dict__)
 
 @app.route("/references")
 def references():
diff --git a/wqflask/wqflask/yaml_data/whats_new.yaml b/wqflask/wqflask/yaml_data/whats_new.yaml
deleted file mode 100755
index 8f41a8f2..00000000
--- a/wqflask/wqflask/yaml_data/whats_new.yaml
+++ /dev/null
@@ -1,26 +0,0 @@
-news:
--
-    date: 2012-1-20
-    title: Mouse SNPs from dbSNP have been added to GeneNetwork
-    details: 
-        10 million mouse SNPs from dbSNP (build 128) have been added to Variant Browser.
-        They could be searched by name (e.g. rs31192936) (Implemented by Xiaodong Zhou and Ning Liu).
-
--
-    date: 2012-1-20
-    title: Literature correlation has been update to 2011 version
-    details: 
-        Dr. Ramin Homayouni and Dr. Lijing Xu kindly provide the 2011 version of mouse gene-gene
-        literature correlation matrix to GeneNetwork. (Implemented by Xiaodong Zhou).
-
--
-    date: 2012-1-16
-    title: Expression data set for EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA ** has been entered in GeneNetwork
-    details: 
-        Laboratory of Integrative and Systems Physiology
-        (<a href="http://auwerx-lab.epfl.ch/">LISP</a>).
-        This data set is not yet freely available for global analysis.
-        This data set has not yet been used or described in any publication.
-        Please contact Johan Auwerx or Evan Williams at evan.williams@epfl.ch
-        regarding use of these data. (Implemented by J Auwerx, E Williams, LA Rose,
-        RW Williams and A Centeno).
\ No newline at end of file