diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/correlation/rust_correlation.py | 24 |
1 files changed, 22 insertions, 2 deletions
diff --git a/wqflask/wqflask/correlation/rust_correlation.py b/wqflask/wqflask/correlation/rust_correlation.py index fc8ab508..c7dc665f 100644 --- a/wqflask/wqflask/correlation/rust_correlation.py +++ b/wqflask/wqflask/correlation/rust_correlation.py @@ -15,8 +15,7 @@ from gn3.computations.rust_correlation import parse_tissue_corr_data from gn3.db_utils import database_connector -def query_probes_metadata(dataset, results): - +def query_probes_metadata(dataset, trait_list): """query traits metadata in bulk for probeset""" with database_connector() as conn: @@ -43,6 +42,26 @@ def query_probes_metadata(dataset, results): return cursor.fetchall() +def get_metadata(dataset, traits): + + return {trait_name: { + "name": trait_name, + "view": True, + "symbol": symbol, + "dataset": dataset.name, + "dataset_name": dataset.shortname, + "mean": mean, + "description": description, + "additive": additive, + "lrs_score": f"{lrs:3.1f}", + "location": f"Chr{probe_chr}: {probe_mb:.6f}", + "lrs_location": f"Chr{chr_score}: {mb:.6f}" + + } for trait_name, probe_chr, probe_mb, symbol, mean, description, + additive, lrs, chr_score, mb + in query_probes_metadata(dataset, traits)} + + def chunk_dataset(dataset, steps, name): results = [] @@ -296,5 +315,6 @@ def compute_correlation_rust( results, top_a, top_b), "this_trait": this_trait.name, "target_dataset": start_vars['corr_dataset'], + "traits_metadata": get_metadata(target_dataset, list(results.keys())), "return_results": n_top } |