diff options
Diffstat (limited to 'wqflask/wqflask/templates/marker_regression_gn1.html')
| -rw-r--r-- | wqflask/wqflask/templates/marker_regression_gn1.html | 165 |
1 files changed, 101 insertions, 64 deletions
diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html index f3f33fad..978ea55f 100644 --- a/wqflask/wqflask/templates/marker_regression_gn1.html +++ b/wqflask/wqflask/templates/marker_regression_gn1.html @@ -20,8 +20,9 @@ {% endfor %} <input type="hidden" name="maf"> <input type="hidden" name="selected_chr" value="{{ selectedChr }}"> - <input type="hidden" name="manhattan_plot"> + <input type="hidden" name="manhattan_plot" value="{{ manhattan_plot }}"> <input type="hidden" name="num_perm" value="{{ nperm }}"> + <input type="hidden" name="perm_results" value=""> <input type="hidden" name="num_bootstrap" value="{{ nboot }}"> <input type="hidden" name="do_control" value="{{ doControl }}"> <input type="hidden" name="control_marker" value="{{ controlLocus }}"> @@ -117,10 +118,10 @@ <span style="color:red;">*</span> <br> <input type="checkbox" name="showGenes" class="checkbox" style="display: inline; margin-top: 0px;" {% if geneChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Gene Track </span> <span style="color:red;">*</span><br> - <input type="checkbox" name="viewLegend" class="checkbox" style="display: inline; margin-top: 0px;" {% if legendChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Legend </span><br> {% if plotScale != "morgan" %} - <input type="checkbox" name="haplotypeAnalystCheck" class="checkbox" style="display: inline; margin-top: 0px;" {% if haplotypeAnalystChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Haplotype Analyst </span> <span style="color:red;">*</span> + <input type="checkbox" name="haplotypeAnalystCheck" class="checkbox" style="display: inline; margin-top: 0px;" {% if haplotypeAnalystChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Haplotype Analyst </span> <span style="color:red;">*</span><br> {% endif %} + <input type="checkbox" name="viewLegend" class="checkbox" style="display: inline; margin-top: 0px;" {% if legendChecked|upper == "ON" %}value="ON" checked{% endif %}> <span style="font-size: 12px;">Legend </span> </div> <div class="col-xs-12" align="center" style="padding: 5px;"> <span style="color:red;">*</span> <span style="font-size: 12px;">only apply to single chromosome physical mapping</span> @@ -143,14 +144,17 @@ <div class="tab-pane active" id="gn1_map"> <div class="qtlcharts"> {{ gifmap|safe }} - <img src="/static/output/{{ filename }}.jpeg" usemap="#WebQTLImageMap"> + <img src="/generated/{{ filename }}.jpeg" usemap="#WebQTLImageMap"> {% if additiveChecked|upper == "ON" %} <br> <span style="white-space: nowrap;">A positive additive coefficient (green line) indicates that {{ dataset.group.parlist[1] }} alleles increase trait values. In contrast, a negative additive coefficient (orange line) indicates that {{ dataset.group.parlist[0] }} alleles increase trait values.</span> {% endif %} - {% if nperm > 0 %} + {% if nperm > 0 and permChecked == "ON" %} <br><br> - <img src="/static/output/{{ perm_filename }}.gif"> + <img src="/generated/{{ perm_filename }}.gif"> + <br><br> + Total of {{ nperm }} permutations <a href="javascript:export_perm_data();" target="_blank" >Download Permutation Results</a> + <br> {% endif %} </div> </div> @@ -165,65 +169,75 @@ </div> </form> - {% if selectedChr == -1 %} <div style="width:48%;"> - <h2> - Results - </h2> - <table id="qtl_results" class="table table-hover table-striped"> - <thead> - <tr> - <th></th> - <th>Index</th> - <th>{{ LRS_LOD }}</th> - <th>Chr</th> - {% if plotScale == "centimorgan" %} - <th>cM</th> - {% else %} - <th>Mb</th> - {% endif %} - <th>Locus</th> - </tr> - </thead> - <tbody> - {% for marker in trimmed_markers %} - <tr> - <td> - <input type="checkbox" name="selectCheck" - class="checkbox edit_sample_checkbox" - value="{{ marker.name }}" checked="checked"> - </td> - <td align="right">{{ loop.index }}</td> - {% if LRS_LOD == "LOD" %} - {% if 'lod_score' in marker %} - <td>{{ '%0.2f' | format(marker.lod_score|float) }}</td> - {% else %} - <td>{{ '%0.2f' | format(marker.lrs_value|float / 4.16) }}</td> - {% endif %} - {% else %} - {% if 'lod_score' in marker %} - <td>{{ '%0.2f' | format(marker.lod_score|float * 4.16) }}</td> - {% else %} - <td>{{ '%0.2f' | format(marker.lrs_value|float) }}</td> - {% endif %} - {% endif %} - <td>{{marker.chr}}</td> - <td>{{ '%0.6f' | format(marker.Mb|float) }}</td> - <td> - {{ marker.name }} - <!--<a href="{{ url_for('show_trait_page', - trait_id = marker.name, - dataset = dataset.name - )}}"> - {{ marker.name }} - </a>--> - </td> - </tr> - {% endfor %} - </tbody> - </table> + {% if selectedChr == -1 %} + <h2>Results</h2> + <table id="qtl_results" class="table table-hover table-striped"> + <thead> + <tr> + <th></th> + <th>Index</th> + <th>{{ LRS_LOD }}</th> + <th>Chr</th> + {% if plotScale == "centimorgan" %} + <th>cM</th> + {% else %} + <th>Mb</th> + {% endif %} + <th>Locus</th> + </tr> + </thead> + <tbody> + {% for marker in trimmed_markers %} + <tr> + <td> + <input type="checkbox" name="selectCheck" + class="checkbox edit_sample_checkbox" + value="{{ marker.name }}" checked="checked"> + </td> + <td align="right">{{ loop.index }}</td> + {% if LRS_LOD == "LOD" %} + {% if 'lod_score' in marker %} + <td>{{ '%0.2f' | format(marker.lod_score|float) }}</td> + {% else %} + <td>{{ '%0.2f' | format(marker.lrs_value|float / 4.16) }}</td> + {% endif %} + {% else %} + {% if 'lod_score' in marker %} + <td>{{ '%0.2f' | format(marker.lod_score|float * 4.16) }}</td> + {% else %} + <td>{{ '%0.2f' | format(marker.lrs_value|float) }}</td> + {% endif %} + {% endif %} + <td>{{marker.chr}}</td> + <td>{{ '%0.6f' | format(marker.Mb|float) }}</td> + <td>{{ marker.name }}</td> + </tr> + {% endfor %} + </tbody> + </table> + {% elif selectedChr > -1 %} + <h2>Interval Analyst</h2> + <table id="interval_analyst" class="table table-hover table-striped"> + <thead> + <tr> + {% for header in gene_table_header %} + <th>{{ header|safe }}</th> + {% endfor %} + </tr> + </thead> + <tbody> + {% for row in gene_table_body %} + <tr> + {% for n in range(row|length) %} + <td>{{ row[n]|safe }}</td> + {% endfor %} + </tr> + {% endfor %} + </tbody> + </table> + {% endif %} </div> - {% endif %} </div> <!-- End of body --> @@ -282,7 +296,20 @@ "scrollCollapse": true, "paging": false } ); - console.timeEnd("Creating table"); + + $('#interval_analyst').dataTable( { + "columnDefs": [ { + "targets": 0, + "sortable": false + }], + "order": [[3, "asc"]], + "sDom": "RZtir", + "iDisplayLength": -1, + "autoWidth": true, + "bDeferRender": true, + "bSortClasses": false, + "paging": false + } ); $('#vector_map_tab').click(function(){ $('div#gn1_map_options').hide(); @@ -315,6 +342,16 @@ return $('#marker_regression_form').submit(); }; + export_perm_data = function() { + var num_perm, perm_data; + num_perm = js_data.num_perm + perm_data = js_data.perm_results + json_perm_data = JSON.stringify(perm_data); + $('input[name=perm_results]').val(json_perm_data); + $('#marker_regression_form').attr('action', '/export_perm_data'); + return $('#marker_regression_form').submit(); + }; + </script> {% endblock %} |