1 files changed, 91 insertions, 0 deletions
diff --git a/wqflask/wqflask/static/new/javascript/create_interval_map.coffee b/wqflask/wqflask/static/new/javascript/create_interval_map.coffee
new file mode 100644
index 00000000..cacba03e
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+++ b/wqflask/wqflask/static/new/javascript/create_interval_map.coffee
@@ -0,0 +1,91 @@
+create_interval_map = ->
+    h = 500
+    w = 1200
+    margin = {left:60, top:40, right:40, bottom: 40, inner:5}
+    halfh = (h+margin.top+margin.bottom)
+    totalh = halfh*2
+    totalw = (w+margin.left+margin.right)
+    
+    # simplest use
+    #d3.json "data.json", (data) ->
+    mychart = lodchart().lodvarname("lod.hk")
+                        .height(h)
+                        .width(w)
+                        .margin(margin)
+    
+    data = js_data.json_data
+    
+    d3.select("div#topchart")
+      .datum(data)
+      .call(mychart)
+    
+    # grab chromosome rectangles; color pink on hover
+    chrrect = mychart.chrSelect()
+    chrrect.on "mouseover", ->
+                d3.select(this).attr("fill", "#E9CFEC")
+           .on "mouseout", (d,i) ->
+                d3.select(this).attr("fill", ->
+                      return "#F1F1F9"  if i % 2
+                      "#FBFBFF")
+    
+    # animate points at markers on click
+    mychart.markerSelect()
+              .on "click", (d) ->
+                    r = d3.select(this).attr("r")
+                    d3.select(this)
+                      .transition().duration(500).attr("r", r*3)
+                      .transition().duration(500).attr("r", r)
+
+create_interval_map()
+
+$("#export").click =>
+    #Get d3 SVG element
+    svg = $("#topchart").find("svg")[0]
+    
+    #Extract SVG text string
+    svg_xml = (new XMLSerializer).serializeToString(svg)
+    console.log("svg_xml:", svg_xml)
+        
+    #Set filename
+    filename = "interval_map_" + js_data.this_trait
+
+    #Make a form with the SVG data
+    form = $("#exportform")
+    form.find("#data").val(svg_xml)
+    form.find("#filename").val(filename)
+    form.submit()
+
+# two LOD charts within one SVG
+#d3.json "data.json", (data) ->
+#  mychart_em = lodchart().lodvarname("lod.em")
+#                         .height(h)
+#                         .width(w)
+#                         .margin(margin)
+#                         .ylab("LOD score (by EM)")
+#                         .pointsize(1)
+#                         .nyticks(9)
+#                         .title("Standard interval mapping")
+#  mychart_hk = lodchart().lodvarname("lod.hk")
+#                         .height(h)
+#                         .width(w)
+#                         .margin(margin)
+#                         .ylab("LOD score (by H-K)")
+#                         .linecolor("Crimson")
+#                         .yticks([0, 1, 2, 4, 6, 8])
+#                         .title("Haley-Knott regression")
+#
+#  svg = d3.select("div#bottomchart")
+#          .append("svg")
+#          .attr("height", totalh)
+#          .attr("width", totalw)
+#
+#  chart1 = svg.append("g").attr("id", "chart1")
+#
+#  chart2 = svg.append("g").attr("id", "chart2")
+#              .attr("transform", "translate(0, #{halfh})")
+#
+#  chart1.datum(data)
+#    .call(mychart_em)
+#
+#  chart2.datum(data)
+#    .call(mychart_hk)
+\ No newline at end of file