1 files changed, 0 insertions, 118 deletions
diff --git a/wqflask/utility/webqtlUtil.py b/wqflask/utility/webqtlUtil.py
deleted file mode 100644
index 0cb71567..00000000
--- a/wqflask/utility/webqtlUtil.py
+++ /dev/null
@@ -1,118 +0,0 @@
-# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
-#
-# This program is free software: you can redistribute it and/or modify it
-# under the terms of the GNU Affero General Public License
-# as published by the Free Software Foundation, either version 3 of the
-# License, or (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# See the GNU Affero General Public License for more details.
-#
-# This program is available from Source Forge: at GeneNetwork Project
-# (sourceforge.net/projects/genenetwork/).
-#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
-#
-#
-#
-# This module is used by GeneNetwork project (www.genenetwork.org)
-#
-# Created by GeneNetwork Core Team 2010/08/10
-#
-# Last updated by GeneNetwork Core Team 2010/10/20
-
-import string
-import time
-import re
-import math
-from math import *
-
-from base import webqtlConfig
-
-# NL, 07/27/2010. moved from webqtlForm.py
-# Dict of Parents and F1 information, In the order of [F1, Mat, Pat]
-ParInfo = {
-    'BXH': ['BHF1', 'HBF1', 'C57BL/6J', 'C3H/HeJ'],
-    'AKXD': ['AKF1', 'KAF1', 'AKR/J', 'DBA/2J'],
-    'BXD': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-    'C57BL-6JxC57BL-6NJF2': ['', '', 'C57BL/6J', 'C57BL/6NJ'],
-    'BXD300': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-    'B6BTBRF2': ['B6BTBRF1', 'BTBRB6F1', 'C57BL/6J', 'BTBRT<+>tf/J'],
-    'BHHBF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
-    'BHF2': ['B6HF2', 'HB6F2', 'C57BL/6J', 'C3H/HeJ'],
-    'B6D2F2': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-    'BDF2-1999': ['B6D2F2', 'D2B6F2', 'C57BL/6J', 'DBA/2J'],
-    'BDF2-2005': ['B6D2F1', 'D2B6F1', 'C57BL/6J', 'DBA/2J'],
-    'CTB6F2': ['CTB6F2', 'B6CTF2', 'C57BL/6J', 'Castaneous'],
-    'CXB': ['CBF1', 'BCF1', 'C57BL/6ByJ', 'BALB/cByJ'],
-    'AXBXA': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
-    'AXB': ['ABF1', 'BAF1', 'C57BL/6J', 'A/J'],
-    'BXA': ['BAF1', 'ABF1', 'C57BL/6J', 'A/J'],
-    'LXS': ['LSF1', 'SLF1', 'ISS', 'ILS'],
-    'HXBBXH': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv'],
-    'BayXSha': ['BayXShaF1', 'ShaXBayF1', 'Bay-0', 'Shahdara'],
-    'ColXBur': ['ColXBurF1', 'BurXColF1', 'Col-0', 'Bur-0'],
-    'ColXCvi': ['ColXCviF1', 'CviXColF1', 'Col-0', 'Cvi'],
-    'SXM': ['SMF1', 'MSF1', 'Steptoe', 'Morex'],
-    'HRDP': ['SHR_BNF1', 'BN_SHRF1', 'BN-Lx/Cub', 'SHR/OlaIpcv']
-}
-
-#########################################
-#      Accessory Functions
-#########################################
-
-
-def genRandStr(prefix="", length=8, chars=string.ascii_letters + string.digits):
-    from random import choice
-    _str = prefix[:]
-    for i in range(length):
-        _str += choice(chars)
-    return _str
-
-
-def ListNotNull(lst):
-    '''Obsolete - Use built in function any (or all or whatever)
-
-
-    Determine if the elements in a list are all null
-
-    '''
-    for item in lst:
-        if item is not None:
-            return 1
-    return None
-
-
-def readLineCSV(line):  # dcrowell July 2008
-    """Parses a CSV string of text and returns a list containing each element as a string.
-    Used by correlationPage"""
-    returnList = line.split('","')
-    returnList[-1] = returnList[-1][:-2]
-    returnList[0] = returnList[0][1:]
-    return returnList
-
-
-def cmpEigenValue(A, B):
-    try:
-        if A[0] > B[0]:
-            return -1
-        elif A[0] == B[0]:
-            return 0
-        else:
-            return 1
-    except:
-        return 0
-
-
-def hasAccessToConfidentialPhenotypeTrait(privilege, userName, authorized_users):
-    access_to_confidential_phenotype_trait = 0
-    if webqtlConfig.USERDICT[privilege] > webqtlConfig.USERDICT['user']:
-        access_to_confidential_phenotype_trait = 1
-    else:
-        AuthorizedUsersList = [x.strip() for x in authorized_users.split(',')]
-        if userName in AuthorizedUsersList:
-            access_to_confidential_phenotype_trait = 1
-    return access_to_confidential_phenotype_trait