diff options
Diffstat (limited to 'wqflask/scripts')
| -rw-r--r-- | wqflask/scripts/index.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/wqflask/scripts/index.py b/wqflask/scripts/index.py index 447cc157..14e93dd1 100644 --- a/wqflask/scripts/index.py +++ b/wqflask/scripts/index.py @@ -120,6 +120,9 @@ def main(): write_document(db, trait["name"].bind(lambda name: f"Q{name}"), "gene", doc) with database_connection() as conn: + # FIXME: Some years are blank strings or strings that + # contain text other than the year. These should be fixed + # in the database and the year field must be made an integer. for i, trait in enumerate(sql_query_mdict(conn, """ SELECT Species.Name AS species, InbredSet.Name AS `group`, @@ -132,7 +135,7 @@ def main(): Publication.Abstract, Publication.Title, Publication.Authors AS authors, - IF(Publication.Year='', 0, Publication.Year) AS year, + IF(CONVERT(Publication.Year, UNSIGNED)=0, NULL, CONVERT(Publication.Year, UNSIGNED)) AS year, Publication.PubMed_ID AS pubmed_id, PublishXRef.LRS as lrs, PublishXRef.additive, |