diff options
Diffstat (limited to 'wqflask/scripts')
| -rw-r--r-- | wqflask/scripts/textfiles_generator.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/wqflask/scripts/textfiles_generator.py b/wqflask/scripts/textfiles_generator.py index b7c94eb0..aa8f1647 100644 --- a/wqflask/scripts/textfiles_generator.py +++ b/wqflask/scripts/textfiles_generator.py @@ -11,6 +11,7 @@ import lmdb import os + """ *script generate both metadata and probeset textfiles *manually commonly used datasets @@ -28,12 +29,14 @@ flags: -- textfile to generate the probeset strain data +# set the TMPDIR for example +export TMPDIR = "/tmp/gn2" # example python3 - python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" /tmp --textfile - python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" /tmp --metadata + python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" $TMPDIR --textfile + python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" $TMPDIR --metadata -python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" /tmp --metadata --textfile +python3 meta_data_script.py "mysql://kabui:1234@localhost/db_webqtl" $TMPDIR --metadata --textfile """ |