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-rw-r--r--wqflask/maintenance/gen_select_dataset.py5
1 files changed, 5 insertions, 0 deletions
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index f480d63f..583a06e1 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -55,6 +55,7 @@ from pprint import pformat as pf
#conn = Engine.connect()
+
def parse_db_uri():
"""Converts a database URI to the db name, host name, user name, and password"""
@@ -143,6 +144,7 @@ def phenotypes_exist(group_name):
else:
return False
+
def genotypes_exist(group_name):
#print("group_name:", group_name)
Cursor.execute("""select Name from GenoFreeze
@@ -156,6 +158,7 @@ def genotypes_exist(group_name):
else:
return False
+
def build_types(species, group):
"""Fetches tissues
@@ -184,6 +187,7 @@ def build_types(species, group):
return results
+
def get_datasets(types):
"""Build datasets list"""
datasets = {}
@@ -308,6 +312,7 @@ def _test_it():
datasets = build_datasets("Mouse", "BXD", "Hippocampus")
#print("build_datasets:", pf(datasets))
+
if __name__ == '__main__':
Conn = MySQLdb.Connect(**parse_db_uri())
Cursor = Conn.cursor()