diff options
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py (renamed from wqflask/base/webqtlDataset.py) | 23 |
1 files changed, 14 insertions, 9 deletions
diff --git a/wqflask/base/webqtlDataset.py b/wqflask/base/data_set.py index 933077fd..992c673e 100755 --- a/wqflask/base/webqtlDataset.py +++ b/wqflask/base/data_set.py @@ -30,7 +30,7 @@ import webqtlConfig -class webqtlDataset: +class DataSet(object): """ Dataset class defines a dataset in webqtl, can be either Microarray, Published phenotype, genotype, or user input dataset(temp) @@ -55,14 +55,7 @@ class webqtlDataset: self.fullname = 'Temporary Storage' self.shortname = 'Temp' elif dbName.find('Publish') >= 0: - self.searchfield = ['name','post_publication_description','abstract','title','authors'] - self.disfield = ['name','pubmed_id', - 'pre_publication_description', 'post_publication_description', 'original_description', - 'pre_publication_abbreviation', 'post_publication_abbreviation', - 'lab_code', 'submitter', 'owner', 'authorized_users', - 'authors','title','abstract', 'journal','volume','pages','month', - 'year','sequence', 'units', 'comments'] - self.type = 'Publish' + pass elif dbName.find('Geno') >= 0: self.searchfield = ['name','chr'] self.disfield = ['name','chr','mb', 'source2', 'sequence'] @@ -155,3 +148,15 @@ class webqtlDataset: def genHTML(self, Class='c0dd'): return HT.Href(text = HT.Span('%s Database' % self.fullname, Class= "fwb " + Class), url= webqtlConfig.INFOPAGEHREF % self.name,target="_blank") + +class PhenotypeDataSet(DataSet): + + def __init__(self): + self.searchfield = ['name','post_publication_description','abstract','title','authors'] + self.disfield = ['name','pubmed_id', + 'pre_publication_description', 'post_publication_description', 'original_description', + 'pre_publication_abbreviation', 'post_publication_abbreviation', + 'lab_code', 'submitter', 'owner', 'authorized_users', + 'authors','title','abstract', 'journal','volume','pages','month', + 'year','sequence', 'units', 'comments'] + self.type = 'Publish'
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