diff options
Diffstat (limited to 'wqflask/base')
| -rw-r--r-- | wqflask/base/data_set.py | 13 | ||||
| -rw-r--r-- | wqflask/base/mrna_assay_tissue_data.py | 4 | ||||
| -rw-r--r-- | wqflask/base/webqtlCaseData.py | 3 |
3 files changed, 0 insertions, 20 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 211c6752..8206b67c 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -22,7 +22,6 @@ from dataclasses import field from dataclasses import InitVar from typing import Optional, Dict, List from db.call import fetchall, fetchone, fetch1 -from utility.logger import getLogger from utility.tools import USE_GN_SERVER, USE_REDIS, flat_files, flat_file_exists, GN2_BASE_URL from db.gn_server import menu_main from pprint import pformat as pf @@ -60,8 +59,6 @@ from redis import Redis r = Redis() -logger = getLogger(__name__) - # Used by create_database to instantiate objects # Each subclass will add to this DS_NAME_MAP = {} @@ -200,7 +197,6 @@ def create_datasets_list(): result = r.get(key) if result: - logger.debug("Redis cache hit") datasets = pickle.loads(result) if result is None: @@ -213,10 +209,6 @@ def create_datasets_list(): for dataset_type in type_dict: query = "SELECT Name FROM {}".format(type_dict[dataset_type]) for result in fetchall(query): - # The query at the beginning of this function isn't - # necessary here, but still would rather just reuse - # it logger.debug("type: {}\tname: - # {}".format(dataset_type, result.Name)) dataset = create_dataset(result.Name, dataset_type) datasets.append(dataset) @@ -259,9 +251,6 @@ class Markers: self.markers = markers def add_pvalues(self, p_values): - logger.debug("length of self.markers:", len(self.markers)) - logger.debug("length of p_values:", len(p_values)) - if isinstance(p_values, list): # THIS IS only needed for the case when we are limiting the number of p-values calculated # if len(self.markers) > len(p_values): @@ -664,8 +653,6 @@ class DataSet: """ % (query_args)) except TypeError: - logger.debug( - "Dataset {} is not yet available in GeneNetwork.".format(self.name)) pass def chunk_dataset(self, dataset, n): diff --git a/wqflask/base/mrna_assay_tissue_data.py b/wqflask/base/mrna_assay_tissue_data.py index 8f8e2b0a..d7e747aa 100644 --- a/wqflask/base/mrna_assay_tissue_data.py +++ b/wqflask/base/mrna_assay_tissue_data.py @@ -9,10 +9,6 @@ from utility.db_tools import escape from gn3.db_utils import database_connector -from utility.logger import getLogger -logger = getLogger(__name__) - - class MrnaAssayTissueData: def __init__(self, gene_symbols=None): diff --git a/wqflask/base/webqtlCaseData.py b/wqflask/base/webqtlCaseData.py index 25b6cb8a..dd6fad04 100644 --- a/wqflask/base/webqtlCaseData.py +++ b/wqflask/base/webqtlCaseData.py @@ -21,9 +21,6 @@ # Created by GeneNetwork Core Team 2010/08/10 -from utility.logger import getLogger -logger = getLogger(__name__) - import utility.tools utility.tools.show_settings() |