diff options
Diffstat (limited to 'web/genotypes/BDF2-2005.geno.update.recal')
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1 files changed, 90 insertions, 0 deletions
diff --git a/web/genotypes/BDF2-2005.geno.update.recal b/web/genotypes/BDF2-2005.geno.update.recal new file mode 100755 index 00000000..ae862cc1 --- /dev/null +++ b/web/genotypes/BDF2-2005.geno.update.recal @@ -0,0 +1,90 @@ +#this is BDF2-2005 genotype file, it should be tab-delimited +#the first three/four columns should be "Chr, Locus, cM, [Mb]" (case sensitive) +#please save as Unix format text file. +#comment line always start with a '#' +#type riset or intercross +@type:intercross +@name:B6D2F2-2005 +#abbreviation of maternal or paternal parents +@mat:B +@pat:D +#heterozygous , optional, default is "H" +@het:H +#Unknown , optional, default is "U" +@unk:U +Chr Locus cM Mb CASE05_702 CASE05_704 CASE05_707 CASE05_709 CASE05_710 CASE05_712 CASE05_713 CASE05_715 CASE05_716 CASE05_719 CASE05_720 CASE05_722 CASE05_723 CASE05_724 CASE05_725 CASE05_726 CASE05_727 CASE05_728 CASE05_729 CASE05_732 CASE05_734 CASE05_735 CASE05_736 CASE05_737 CASE05_739 CASE05_741 CASE05_743 CASE05_746 CASE05_754 CASE05_771 CASE05_785 CASE05_793 CASE05_795 CASE05_796 CASE05_798 CASE05_799 CASE05_800 CASE05_801 CASE05_802 CASE05_803 CASE05_806 CASE05_807 CASE05_808 CASE05_809 CASE05_811 CASE05_813 CASE05_814 CASE05_815 CASE05_816 CASE05_817 CASE05_819 CASE05_821 CASE05_824 CASE05_825 CASE05_826 CASE05_828 CASE05_829 CASE05_830 CASE05_833 CASE05_835 +1 D1Mit118 4.400 3.959096 D H D B H B H H U H D D B D H B H B B H H H H B H H D H D H B D H H H B D H H H B D H H H H D D H H D H D D B H D D H H +1 D1Mit300 32.800 63.815118 D H D B B H B H H H H D H H H B H B B H H H B H H D D H D H B D H H D B D B H H H H D H H B H D D B H H H D H H D D H H +1 D1Mit48 52.500 90.399410 H D D B B H B H H H H D H H B B H B H H H H B H H D D H D H B D H H D B D B H H H H D H H B H D D B H H H D H H D D D H +1 D1Mit206 94.000 174.840872 D B H B H H B D B B H H D D B B D H H B H B D H H D H D H H H D H H D H B B H H B D D H D B H D D H H D H B D B H D H D +2 D2Mit6 12.000 20.810720 H D U B H D D H H H H D H H H B D B D B H D D H H H H H D H D B H B H H H B B D B B B H H D B B D H H D H B H B B H H D +2 D2Mit61 36.100 60.491106 H H U D D D D H B B H H B H D B H B D B H H B B H H H B D B D B H D B H D H H D B B B H B D B B D H H D H B H H B H B H +2 D2Mit164 56.800 123.081493 H D H B H D D H H H H D H H H B D B D B H D D H U H H H D H D B H B H H H B B D B B U H H D B B D H H D H B H B B H H D +2 D2Mit200 107.000 179.721107 H D D B H B B H H D D H D H B H H B H B D H H B H D D H H H D H D H H D H H H B B B D H H H H H H H B D D D B D B D H U +3 D3Mit65 17.500 50.781072 H H B D H H H H B B B H H H H H B D H H H D H D H D B H H B B H H D H B H H H D D B B H H H B H H H D H D B D D H D B B +3 D3Mit156 33.900 92.641397 H H H D B B H H H B H H H H D H B D H D B D H D D B B H H B U H D H B B H H H D B B B H B H B D D B D H B H D H H H B B +3 D3Mit17 50.300 143.584610 H H H D B H H B D H H D H H H H D D H D H H H D H H D H H H H B B H H D H H H D H H D D B B B D H H B B H B H B H B D B +3 D3Mit147 59.000 148.682794 H H H B B H H B U H H D H H H H D D H B H H H D H H D H B H H B B H D D H D H D H H D D B H B D H D B B B B D B H B D B +3 D3Mit19 66.700 157.918332 H H H D B B H B B H H D U H H H D D H D H H H H H H H H B H H B B H D B H D H D H H D D B H B D B D B B B H H B H B D H +4 D4Mit192 10.900 31.305846 H D H B B D H H D B D H B B D H H H H H H B H H B H H H H D H H D D H H H D B D H B D D B B H D H B D H D B D D D B D B +4 D4Mit142 30.600 73.690567 D D D B B B H B H B D H H D B D D D H D H H H H B D D H D D H H D H H H H H B D H H H D H H B H H B D B D H H H H B D H +4 D4Mit37 53.600 116.712705 D H D B B B H B H B D H H D H D D D H D H D H D B D H B D D H B D D H D H B B D H H H D D H B B D D H H B H B H H U D H +4 D4Mit343 79.000 141.978023 D H D B B B B H B H H B H D B H H H B H U H D D B H U B D D D B D B U D H B U D H B H B D H B B D D H B B H B B H D H H +5 D5Mit294 5.500 20.869140 B B H D D B H B H B H H D D H H B H B B B D B D D D H B B D H H H H H D B D D H D H H H H H D H B H B B B D B H H H D H +5 D5Mit197 26.200 64.928222 B B H D D B H H H H H H H H H H B H B B B D H D H D H B B B H H D H H D B H H H D H H H U H D B B H B H H D H D H D D H +5 D5Mit95 57.900 125.118213 H H H H D B B H B U H H H H H H H H H H U D H H B D B B B H U H H H B D H B H U H B B D H D H H B B H H B D H D H D H B +5 D5Mit168 78.000 137.343001 H D H D U B B H B D H B B H B D H H H H D D H D B D B B B H D U H D B D H H B D H B B D D D D H B B H D H D D D H D B B +6 D6Mit159 6.600 29.701231 D B B H B D B D H D B B B D H B B H H H H H D B D H H H H D B D D H H B H H U H H H H H B D D D B H D H B H D D H H D H +6 D6Mit93 12.000 52.091295 D B B D B H B D H D B D B H H B H H H B H H H H D H H H H D B H D H B H H D H B H B H D B D D D B H D B D H H D H D H H +6 D6Mit9 36.500 87.391538 D H H D B U B D H D H H B H H H H H H H H H H B D H H B D H B H B H B D U D H H B B H D H D D D B B H B D H H D H H H D +6 D6Mit39 40.400 106.535002 H H D D B H H D D D H H B H H H H H H H H H B B D B H B D H H H B H B D B D H H B U H D H D D D B B B B D H B D H H H D +6 D6Mit194 61.500 128.131103 B H D D B B H H D D H B B H B H H D D D H H B B D B H B H H H B B H B D D D H H B B B D H D H D B H B D D H B D U H D D +7 D7Mit114 5.500 26.446903 D B B H D H D D B H D B B H D H D B B B D B H D H B H H B D B B B B D D B H H D D B B B B B D B H B D D H H B H H B H D +7 D7Mit202 28.400 75.749140 H H D D D D H D D H H U B H D H H B B H H B H H H B H D D D B B H H D H D B H H H H D B B H H B B H D D H H H H D D H D +7 D7Mit40 42.600 116.608590 H B D B B H H H U H H H H H B B H B B B H H H U H U B D H D H H H H D H H B H H H D B H H D H B D H D D H H U H D D H H +7 D7Mit334 69.000 138.128114 H H D B B B D H D B B H B U B B H B B D B U D H H H B D H D H H H H D H H B H H B H B D H D D B D H H D B H D H D D H H +8 D8Mit4 12.000 33.482478 H B D H D B H B H H H H H H H H B H B B B D H B H B D B H H D H U H H H H D H H D H H B D D D D D B H H H D D H D D H H +8 D8Mit236 39.000 86.717296 H B H H D B H B H H B H H H B H H H B B B B H D H B H H H H H B B H D H H D B D H H B D D D D D H B H H H D H D D D B H +8 D8Mit56 75.000 131.904508 H B H H D B H B B B H B D B H B H B B D H H U D H H H D B B H H H D D H H D B D B H H D D H D B H H D D D D B H D H H H +9 D9Mit90 7.700 32.250019 H H B H H D H H B D D H B H H H H B D H H B H H H D H H D H D B B D D D H H H H H B H H D H B H B D B H B H H D B H H H +9 D9Mit4 24.000 51.875542 H H B H H D B H B D D H B D H B H B D H H B H D H D H H D H D B H H D D H H H H H H H H B H B H B H B H B H H D B H H H +9 D9Mit236 41.500 79.876594 H D H B H D B H B D D H B D H H H U D U H B H D H D B U D H H B D D H H B H H H H H H B B D U H B H D U H U H D B H H H +9 D9Mit243 60.100 113.225589 B D H H B B H H B H B H B D H H B B H H H B D H B D B B D B D B B H B B H H B B B B H B H D B B H B B B H B B D H H B B +10 D10Mit213 6.600 20.096854 D H D H H H H H H B U H B H H B B B H D H D H H H H H B B H H B H H H U U H H D H D H H B H D H H H H B H H B H D H H H +10 D10Mit20 25.100 66.407764 H B H H H H H H B B B H B B H H H H U H B H H B H D D H H B H H H H H B H U H B H B H D H H D B H H H H H H H U D B H H +10 D10Mit134 57.900 104.015830 B D H D H H B H D B B H B D H H H U D H B H H D H D H H H D H B H H U D H H H H D D H D H H D D D H H B H U H H D D B H +10 D10Mit297 75.400 124.450229 B D H D B H B H H B B H B H H H H D D H B B H D H D H H H H H H H H H D H H B H D H H H H H H D D H H B B D H H H D B H +11 D11Mit78 4.400 17.844333 H D D B D D B H H H H D B H B H H D H D H D B H D H D H H D D H B D H H B H B B B H H H H B H B D B D B B H H H H H B B +11 D11Mit278 37.200 69.103801 B H H H H B B B H H B H H H B H H H H B B H B H B H B H H H H H B H H H B H H H B H B H H H H H H B H H H B H H D B B H +11 D11Mit198 62.300 99.341541 B H D H D B B B H D H D D H B B H H D B B D B H B H B H B B H B B H U H H D D H B H U B H H H H H H H D H B H D B B H H +11 D11Mit338 78.000 115.277872 B H H D H B H B H H D D D B H B H H H B H D B H B D H H B B H H B U H D D D D H H D H B B H H H H B H H H B H D B B H H +12 D12Mit114 23.000 71.003832 H H H D H B H H B H B H D H H H H H H D H D H H D H D H H H B B B B H B B U H B H H D D B D H B B H H H B D B B B B D H +12 D12Mit239 39.300 89.082413 H B H D B U U D B H U H D H H H H B H D B H D B D H D B B H U B B B H B U D H B H D D D B H H B B B H B H B B H B H D H +12 D12Mit18 56.800 113.684506 H B B H H B H D B H H D D D H H H H H D B H D B D B H B B H B H B B H H B H H B H D H D H H H B U B H U H U B D H H D H +12 D12Mit19 56.800 113.731436 U B B H H B H D B H H D D D H H H D H D B H H B D B H B B H B H B B H H B D H B H D H D H H D B B B D U H D B D H H H H +13 D13Mit17 3.300 21.300730 D B H H D D H B B D H H H H H H B B B H D D H H B B D B H B H B H B H B H H H H H H B H B D H B H H H D H H D B H D D D +13 D13Mit253 24.000 64.009124 D H H B D D D H H H H B H H H B D D B H H D H H B H D B H B H B H B D B H H H D H D H H B B H D H H H B H H D H H D D B +13 D13Mit193 32.000 92.255294 D H B B H D D H H H H B H H H B D D B H H D H H B H H B H B H B H B H H D H H D H D H H B B H D H B H B H H D H H D H B +13 D13Mit107 48.000 96.694936 H H H H H H H D D H B H H B B H H H B H H U B H B B H D H B H B H H D H H H H U H D H H B H H H D H D D B H H H D D H B +14 D14Mit50 9.800 19.800933 D H H H H B B D B H H D H H B D H B H H B D D D H D B D H H D H D H H B H U D D D B H B H B H H H D H H D D D D D B D H +14 D14Mit234 31.700 58.598068 H H H H H H B D B D H D H B B D H U B D D D H H D D H U H D D H H H D B H H D H D B H B B B H D H B D B D H H D D B D H +14 D14Mit193 47.000 70.256699 H H B H H H H D B D H D H B B D H D B D D D B H D D H H H D D B H H D B H D D H H B H H B B H D H B D H D H U D D B D U +14 D14Mit95 54.000 108.855319 H H H H U D H D B H B D B B B D D D B D D D B B D D B H H H D B U H D B B H D B H B H H B B H D B B D H D D D U D B D B +15 D15Mit8 14.200 33.407808 H H B B H H D U H B D B B H B D D H B D H B D D H H D U D D H H H B H B B B H B B H H H B H H B D D H B B B H H H H H H +15 D15Mit2 35.000 80.106956 H B B H B H H H H D U H H D D H D H B D D H H D H H D U D D H D D D D B H B H H D H B D D B D B H D D B B B B B H D H H +15 D15Mit161 65.000 96.839092 D B B H B H H H H D D H H D D H H H B D D H H H H D D H D D U D H D D H D B H H D B B D D H D H H D D B B B B H B D H H +16 D16Mit88 9.800 13.162541 B H H H H H H B B B H D H B H H H H B H H D B B H H B D H H D D H H H B B B H H H D H D B H D H D H H H B H D D B D H H +16 D16Mit5 33.000 57.694582 H U D H H H B B B B B B B H H B H U B D D B H B H B B D H H D D H H D B B B B H H H H D B B D H D H U H D H H H B D H H +16 D16Mit106 51.000 97.985065 H B D B H B B B H B B B B H H H B B H H D D H B B H B D H H H D H D D H B B H D H H H H B H D H D H B D D D H H B D B B +17 D17Mit24 10.900 37.090216 B D H H B B H H B H H H H H H H H H D H D B H B H B H H B H B H D B B H D H B B H B H D D H H H H B H H H H D B H H H H +17 D17Mit49 33.700 44.775060 B D H H B B H H B H H H B H H H B H H H D B H B H B H H B H B U D B D H D H H B H B H D H H H H H H H H H H D B H D U H +17 D17Mit221 50.300 89.996029 U B B H B H D H H D H H B H D D H H U H B B B B H U B H H H B H D H H H H D H H H D D D U U H U H H H H U B H H H H U U +18 D18Mit55 16.000 53.283318 H B D H H D B H B D H B B B B H D H B H H D H D D D H D H B B B H B H B H D H D B D D H H U B H H H H B D H B B H D B D +18 D18Mit80 50.000 77.030938 H H D H H D U D B D H H B B B H H H H B B H H D D D B D H H B B H B H B H H H D B D D H H B B H B H H B H D B H H D B D +19 D19Mit16 15.000 20.412874 H H D B B H H H B D H H D B H H H H H H D B D H H H H H B H B H D H B H H B H H D H D H H D H B D D H D B B H H B H H B +19 D19Mit13 29.600 32.705019 H D D B B H B H B H D H D H H H H H H H H B B H H H H H B H B H H H B H H H H H D D D H B D H H D D H D B B H B H D B H +19 D19Mit46 30.100 33.001203 H H D B B H B H B H D D D H H H H H H B H B H H H H H H B H B H H H B H H H H H D D D H H D H H D D H D B B H H H D B H +19 D19Mit55 44.000 55.358264 H D H B H D H D B H D H D H B H D B B H B H B H B H H U H H H D H H B H H H B H H D D H D D H H H H H B B H H H H D H D +X DXMit1 24.000 69.281163 D H H B B D B B D B B D D D D H H D H B D B B B D H H D D B B H H H D D D B B H D D B B H B B B H H H D B D U B H B U D +X DXMit173 40.000 125.727653 D D H H H D B B D H H D D D D D H D H D D B H B U H H D D B H H H U D D H D H H D U U D H B U B H H B B B B D B B H D D +X DXMit186 58.000 160.710266 H D D B B B B B D D B H D D D D H D H D B D B B D H H D D B B H B B D B B D H H B D B D B B H B H H B B B D D B B H D B |