diff options
Diffstat (limited to 'gn2/wqflask/api/markdown.py')
| -rw-r--r-- | gn2/wqflask/api/markdown.py | 116 |
1 files changed, 89 insertions, 27 deletions
diff --git a/gn2/wqflask/api/markdown.py b/gn2/wqflask/api/markdown.py index aa7dd3c4..f9e87ee3 100644 --- a/gn2/wqflask/api/markdown.py +++ b/gn2/wqflask/api/markdown.py @@ -7,6 +7,8 @@ import requests import markdown import os import sys +import urllib.parse +from pathlib import Path from bs4 import BeautifulSoup # type: ignore @@ -27,6 +29,25 @@ news_blueprint = Blueprint("news_blueprint", __name__) xapian_syntax_blueprint = Blueprint("xapian_syntax_blueprint", __name__) blogs_blueprint = Blueprint("blogs_blueprint", __name__) +gn_docs_blueprint = Blueprint("gn_docs_blueprint", __name__) + + +def fetch_raw_markdown(file_path): + """ + This method fetches files from genenetwork:gn docs repo + """ + # todo remove hardcoded file path + safe_query = urllib.parse.urlencode({"file_path": file_path}) + response = requests.get( + f"http://localhost:8091/edit?{safe_query}") + response.raise_for_status() + return response.json() + + +def render_markdown_as_html(content): + """This method converts markdown to html for render""" + return markdown.markdown(content, extensions=["tables"]) + def render_markdown(file_name, is_remote_file=True): @@ -97,35 +118,53 @@ def get_blogs(user: str = "genenetwork", return dict(sorted(blogs.items(), key=lambda x: x[0], reverse=True)) -@glossary_blueprint.route('/') +@gn_docs_blueprint.route('/glossary') def glossary(): + file_data = fetch_raw_markdown(file_path="general/glossary/glossary.md") return render_template( - "glossary.html", - rendered_markdown=render_markdown("general/glossary/glossary.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@references_blueprint.route('/') +@gn_docs_blueprint.route('/references') def references(): + + file_data = fetch_raw_markdown( + file_path="general/references/references.md") return render_template( - "references.html", - rendered_markdown=render_markdown("general/references/references.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@news_blueprint.route('/') +@gn_docs_blueprint.route('/news') def news(): + file_data = fetch_raw_markdown(file_path="general/news/news.md") return render_template( - "news.html", - rendered_markdown=render_markdown("general/news/news.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@xapian_syntax_blueprint.route('/') +@gn_docs_blueprint.route('/xapian') def xapian(): + file_data = fetch_raw_markdown(file_path="general/search/xapian_syntax.md") return render_template( - "search-syntax.html", - rendered_markdown=render_markdown("general/search/xapian_syntax.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@environments_blueprint.route("/") +@gn_docs_blueprint.route("/environments") def environments(): md_file = get_file_from_python_search_path("wqflask/DEPENDENCIES.md") @@ -148,47 +187,70 @@ def environments(): 200 ) # Fallback: Fetch file from server + file_data = fetch_raw_markdown( + file_path="general/environments/environments.md") return (render_template( "environment.html", svg_data=None, - rendered_markdown=render_markdown( - "general/environments/environments.md")), - 200) + rendered_markdown=render_markdown_as_html(file_data["content"]))) -@environments_blueprint.route('/svg-dependency-graph') +@gn_docs_blueprint.route('/svg-dependency-graph') def svg_graph(): directory, file_name, _ = get_file_from_python_search_path( "wqflask/dependency-graph.svg").partition("dependency-graph.svg") return send_from_directory(directory, file_name) -@links_blueprint.route("/") +@gn_docs_blueprint.route("/links") def links(): + file_data = fetch_raw_markdown(file_path="general/links/links.md") return render_template( - "links.html", - rendered_markdown=render_markdown("general/links/links.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@policies_blueprint.route("/") +@gn_docs_blueprint.route("/policies") def policies(): + file_data = fetch_raw_markdown(file_path="general/policies/policies.md") return render_template( - "policies.html", - rendered_markdown=render_markdown("general/policies/policies.md")), 200 + "generic_gn_docs.html", + rendered_markdown=render_markdown_as_html(file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@facilities_blueprint.route("/") +@gn_docs_blueprint.route("/facilities") def facilities(): - return render_template("facilities.html", rendered_markdown=render_markdown("general/help/facilities.md")), 200 + file_data = fetch_raw_markdown(file_path="general/help/facilities.md") + return render_template("generic_gn_docs.html", + rendered_markdown=render_markdown_as_html( + file_data["content"]), + file_path=file_data["file_path"], + file_title=Path(file_data["file_path"]).stem + ) -@blogs_blueprint.route("/<path:blog_path>") +@gn_docs_blueprint.route("/blogs/<path:blog_path>") def display_blog(blog_path): return render_template("blogs.html", rendered_markdown=render_markdown(blog_path)) -@blogs_blueprint.route("/") +@gn_docs_blueprint.route("/blogs") def blogs_list(): blogs = get_blogs() return render_template("blogs_list.html", blogs=blogs) + + +@gn_docs_blueprint.errorhandler(requests.exceptions.HTTPError) +def page_not_found(error): + """ Return error 404 """ + return {"Reason": error.response.reason, + "error_status_code": error.response.status_code, + "error_msg": error.response.text + } |