diff options
Diffstat (limited to 'etc/default_settings.py')
| -rw-r--r-- | etc/default_settings.py | 122 |
1 files changed, 0 insertions, 122 deletions
diff --git a/etc/default_settings.py b/etc/default_settings.py deleted file mode 100644 index c49a3c25..00000000 --- a/etc/default_settings.py +++ /dev/null @@ -1,122 +0,0 @@ -# Default settings file defines a single Flask process for the Python -# webserver running in developer mode with limited console -# output. Copy this file and run it from ./bin/genenetwork2 configfile -# -# Note: these settings are fetched in ./wqflask/utilities/tools.py -# which has support for overriding them through environment variables, -# e.g. -# -# env LOG_SQL=True USE_REDIS=False ./bin/genenetwork2 -# env LOG_LEVEL=DEBUG ./bin/genenetwork2 ~/gn2_settings.py -# -# Typically you need to set GN2_PROFILE too. -# -# Note also that in the near future we will additionally fetch -# settings from a JSON file -# -# Note: values for False and 0 have to be strings here - otherwise -# Flask won't pick them up -# -# For GNU Guix deployment also check the paths in -# -# ~/.guix-profile/lib/python3.8/site-packages/genenetwork2-2.0-py2.7.egg/etc/default_settings.py - -import os -import sys - -GN_VERSION = "2.11-rc2" - -SECRET_KEY = "" - -# Redis -REDIS_URL = "redis://:@localhost:6379/0" - -# gn2-proxy -GN2_PROXY = "http://localhost:8080" - -# GN PROXY -GN_PROXY_URL="https://genenetwork.org/gn3-proxy/" - -# ---- MySQL - -SQL_URI = "mysql://gn2:mysql_password@localhost/db_webqtl_s" -SQL_ALCHEMY_POOL_RECYCLE = 3600 -GN_SERVER_URL = "http://localhost:8880/api/" # REST API server -AUTH_SERVER_URL="http://localhost:9094/" -GN2_BASE_URL = "http://genenetwork.org/" # to pick up REST API -GN2_BRANCH_URL = GN2_BASE_URL - -# ---- Flask configuration (see website) -TRAP_BAD_REQUEST_ERRORS = True -SECURITY_CONFIRMABLE = True -SECURITY_TRACKABLE = True -SECURITY_REGISTERABLE = True -SECURITY_RECOVERABLE = True -SECURITY_EMAIL_SENDER = "no-reply@genenetwork.org" -SECURITY_POST_LOGIN_VIEW = "/thank_you" - -SERVER_PORT = 5003 - -SECRET_HMAC_CODE = '\x08\xdf\xfa\x93N\x80\xd9\\H@\\\x9f`\x98d^\xb4a;\xc6OM\x946a\xbc\xfc\x80:*\xebc' - -GITHUB_CLIENT_ID = "UNKNOWN" -GITHUB_CLIENT_SECRET = "UNKNOWN" -GITHUB_AUTH_URL = "https://github.com/login/oauth/authorize" -GITHUB_API_URL = "https://api.github.com/user" - -ORCID_CLIENT_ID = "UNKNOWN" -ORCID_CLIENT_SECRET = "UNKNOWN" -ORCID_AUTH_URL = "https://orcid.org/oauth/authorize" -ORCID_TOKEN_URL = "https://orcid.org/oauth/token" - -ELASTICSEARCH_HOST = "localhost" -ELASTICSEARCH_PORT = '9200' - -SMTP_CONNECT = "localhost" -SMTP_USERNAME = "UNKNOWN" -SMTP_PASSWORD = "UNKNOWN" - - -# ---- Behavioural settings (defaults) note that logger and log levels can -# be overridden at the module level and with enviroment settings -WEBSERVER_MODE = 'DEV' # Python webserver mode (DEBUG|DEV|PROD) -WEBSERVER_BRANDING = None # Set the branding (nyi) -WEBSERVER_DEPLOY = None # Deployment specifics (nyi) -WEBSERVER_URL = "http://localhost:" + str(SERVER_PORT) + "/" # external URL - -LOG_LEVEL = 'WARNING' # Logger mode (DEBUG|INFO|WARNING|ERROR|CRITICAL) -LOG_LEVEL_DEBUG = '0' # logger.debugf log level (0-5, 5 = show all) -LOG_SQL = 'False' # Log SQL/backend and GN_SERVER calls -LOG_SQL_ALCHEMY = 'False' -LOG_BENCH = True # Log bench marks - -USE_REDIS = True # REDIS caching (note that redis will be phased out) -USE_GN_SERVER = 'False' # Use GN_SERVER SQL calls -HOME = os.environ['HOME'] - -# ---- Default locations -# base dir for all static data files -GENENETWORK_FILES = HOME + "/genotype_files" - -# ---- Path overrides for Genenetwork - the defaults are normally -# picked up from Guix or in the HOME directory - -# TMPDIR is normally picked up from the environment -# PRIVATE_FILES = HOME+"/gn2_private_data" # private static data files (unused) - -# ---- Local path to JS libraries - for development modules (only) -JS_GN_PATH = os.environ['HOME'] + "/genenetwork/javascript" - -# ---- GN2 Executables (overwrite for testing only) -# PLINK_COMMAND = str.strip(os.popen("which plink2").read()) -# GEMMA_COMMAND = str.strip(os.popen("which gemma").read()) -REAPER_COMMAND = os.environ['GN2_PROFILE'] + "/bin/qtlreaper" -CORRELATION_COMMAND = os.environ["GN2_PROFILE"] + "/bin/correlation_rust" -# GEMMA_WRAPPER_COMMAND = str.strip(os.popen("which gemma-wrapper").read()) - -OAUTH2_CLIENT_ID="0bbfca82-d73f-4bd4-a140-5ae7abb4a64d" -OAUTH2_CLIENT_SECRET="yadabadaboo" - -SESSION_TYPE = "redis" -SESSION_PERMANENT = True -SESSION_USE_SIGNER = True |