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Diffstat (limited to 'doc/database.org')
| -rw-r--r-- | doc/database.org | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/doc/database.org b/doc/database.org index d5462d4e..99d2905a 100644 --- a/doc/database.org +++ b/doc/database.org @@ -1370,6 +1370,27 @@ Empty set (0.00 sec) Hmmm. This is the test database. Then there are the plink files and VCF files. +** How to fetch case attribute data + +To fetch case attribute data, you need the PublixshXRef Id and it's +PhenotypeId. Run the following query (as an example): + +#+begin_src sql +SELECT concat(st.Name, ',', ifnull(pd.value, 'x'), ',', + ifnull(ps.error, 'x'), ',', ifnull(ns.count, 'x')) as 'Data', + ifnull(ca.Name, 'x') as 'CaseAttr', ifnull(cxref.value, 'x') as 'Value' +FROM PublishFreeze pf +JOIN PublishXRef px ON px.InbredSetId = pf.InbredSetId +JOIN PublishData pd ON pd.Id = px.DataId +JOIN Strain st ON pd.StrainId = st.Id +LEFT JOIN PublishSE ps ON ps.DataId = pd.Id AND ps.StrainId = pd.StrainId +LEFT JOIN NStrain ns ON ns.DataId = pd.Id AND ns.StrainId = pd.StrainId +LEFT JOIN CaseAttributeXRefNew cxref ON + cxref.InbredSetId = px.InbredSetId +LEFT JOIN CaseAttribute ca ON ca.Id = cxref.CaseAttributeId +WHERE px.Id = 10006 AND px.PhenotypeId = 28409 LIMIT 10; +#+end_src + * Optimize SQL? We were facing some issues with slow queries. A query |