diff options
Diffstat (limited to 'bin/genenetwork2')
| -rwxr-xr-x | bin/genenetwork2 | 32 |
1 files changed, 27 insertions, 5 deletions
diff --git a/bin/genenetwork2 b/bin/genenetwork2 index d3bf3299..d926d6a1 100755 --- a/bin/genenetwork2 +++ b/bin/genenetwork2 @@ -1,24 +1,36 @@ #! /bin/bash # -# This will run the GN2 server (with default settings if none supplied). +# This will run the GN2 server (with default settings if none supplied). Pass in +# your own settings file, e.g. +# +# ./bin/genenetwork2 ~/my_settings.py +# +# To run a maintenance script with settings (instead of the webserver) add that with +# a -c switch, e.g. +# +# ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py # # Environment settings can be used to preconfigure as well as a # settings.py file. -# Absolute path to this script, e.g. /home/user/bin/foo.sh SCRIPT=$(readlink -f "$0") -# Absolute path this script is in, thus /home/user/bin GN2_BASE_PATH=$(dirname $(dirname "$SCRIPT")) GN2_GUIX_PATH=$GN2_BASE_PATH/lib/python2.7/site-packages/genenetwork2-2.0-py2.7.egg if [ -d $GN2_GUIX_PATH ]; then + echo GN2 is running from GUIX GN2_BASE_PATH=$GN2_GUIX_PATH fi echo $GN2_BASE_PATH # Handle settings parameter settings=$1 -if [ -z $settings ]; then settings=$GN2_BASE_PATH/etc/default_settings.py ; fi +if [ -z $settings ]; then + # get default + settings=$GN2_BASE_PATH/etc/default_settings.py +else + shift +fi if [ ! -e $settings ]; then echo "ERROR: can not locate settings file - pass it in the command line" exit 1 @@ -32,7 +44,17 @@ export PYTHONPATH=$GN2_BASE_PATH/wqflask:$PYTHONPATH if [ -z $TEMPDIR ]; then TEMPDIR="/tmp" fi - + +# Now handle command parameter -c +if [ $1 = '-c' ] ; then + cd $GN2_BASE_PATH/wqflask + cmd=${2#wqflask/} + echo PYTHONPATH=$PYTHONPATH + echo RUNNING COMMAND $cmd + /usr/bin/env python $cmd + exit 0 +fi + echo "Starting the redis server:" echo -n "dir $TEMPDIR dbfilename gn2.rdb |