aboutsummaryrefslogtreecommitdiff
path: root/README.md
diff options
context:
space:
mode:
Diffstat (limited to 'README.md')
-rw-r--r--README.md17
1 files changed, 7 insertions, 10 deletions
diff --git a/README.md b/README.md
index 972d5c50..d5539a9f 100644
--- a/README.md
+++ b/README.md
@@ -30,7 +30,7 @@ genenetwork2
A quick example is
```sh
-env GN2_PROFILE=~/opt/gn-latest SERVER_PORT=5300 \
+env SERVER_PORT=5300 \
GENENETWORK_FILES=~/data/gn2_data/ \
GN_PROXY_URL="http://localhost:8080"\
GN3_LOCAL_URL="http://localhost:8081"\
@@ -69,19 +69,16 @@ We are building 'Mechanical Rob' automated testing using Python
which can be run with:
```sh
-env GN2_PROFILE=~/opt/gn-latest \
- ./bin/genenetwork2 \
+env ./bin/genenetwork2 \
GN_PROXY_URL="http://localhost:8080" \
GN3_LOCAL_URL="http://localhost:8081 "\
./etc/default_settings.py -c \
../test/requests/test-website.py -a http://localhost:5003
```
-The GN2_PROFILE is the Guix profile that contains all
-dependencies. The ./bin/genenetwork2 script sets up the environment
-and executes test-website.py in a Python interpreter. The -a switch
-says to run all tests and the URL points to the running GN2 http
-server.
+The ./bin/genenetwork2 script sets up the environment and executes
+test-website.py in a Python interpreter. The -a switch says to run all
+tests and the URL points to the running GN2 http server.
#### Unit tests
@@ -102,9 +99,9 @@ runcmd coverage html
The `runcmd` and `runpython` are shell aliases defined in the following way:
```sh
-alias runpython="env GN2_PROFILE=~/opt/gn-latest TMPDIR=/tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ GN_PROXY_URL="http://localhost:8080" GN3_LOCAL_URL="http://localhost:8081" ./bin/genenetwork2
+alias runpython="env TMPDIR=/tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ GN_PROXY_URL="http://localhost:8080" GN3_LOCAL_URL="http://localhost:8081" ./bin/genenetwork2
-alias runcmd="time env GN2_PROFILE=~/opt/gn-latest TMPDIR=//tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ GN_PROXY_URL="http://localhost:8080" GN3_LOCAL_URL="http://localhost:8081" ./bin/genenetwork2 ./etc/default_settings.py -cli"
+alias runcmd="time env TMPDIR=//tmp SERVER_PORT=5004 GENENETWORK_FILES=/gnu/data/gn2_data/ GN_PROXY_URL="http://localhost:8080" GN3_LOCAL_URL="http://localhost:8081" ./bin/genenetwork2 ./etc/default_settings.py -cli"
```
Replace some of the env variables as per your use case.