diff options
| -rwxr-xr-x | wqflask/cfg/default_settings.py | 2 | ||||
| l--------- | wqflask/maintenance/our_settings.py | 1 | ||||
| -rwxr-xr-x | wqflask/wqflask/static/new/javascript/validation.coffee | 11 | ||||
| -rwxr-xr-x | wqflask/wqflask/static/new/javascript/validation.js | 102 | ||||
| -rwxr-xr-x | wqflask/wqflask/templates/show_trait_mapping_tools.html | 6 |
5 files changed, 77 insertions, 45 deletions
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py index e638a9c0..c9d2a934 100755 --- a/wqflask/cfg/default_settings.py +++ b/wqflask/cfg/default_settings.py @@ -1,6 +1,6 @@ LOGFILE = """/tmp/flask_gn_log""" -SERVER_PORT = 5000 +SERVER_PORT = 5002 #This is needed because Flask turns key errors into a #400 bad request response with no exception/log diff --git a/wqflask/maintenance/our_settings.py b/wqflask/maintenance/our_settings.py deleted file mode 120000 index b14de960..00000000 --- a/wqflask/maintenance/our_settings.py +++ /dev/null @@ -1 +0,0 @@ -../../../lei_settings.py \ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/validation.coffee b/wqflask/wqflask/static/new/javascript/validation.coffee index f28e9bd7..901f8c7c 100755 --- a/wqflask/wqflask/static/new/javascript/validation.coffee +++ b/wqflask/wqflask/static/new/javascript/validation.coffee @@ -27,5 +27,16 @@ $ -> console.log("input isn't valid") $('#remove_samples_invalid').show() + validate_pylmm_permutation = -> + ### + Check if number of permutations is high (and will take long to compute) + ### + input = $('input[name=num_perm_pylmm]').val() + console.log("input:", input) + if input > 20 + $('#permutations_alert').show() + else + $('#permutations_alert').hide() + $('input[name=num_perm_pylmm]').change(validate_pylmm_permutation) $('#remove_samples_field').change(validate_remove_samples) \ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/validation.js b/wqflask/wqflask/static/new/javascript/validation.js index 9536491b..24a2a5b0 100755 --- a/wqflask/wqflask/static/new/javascript/validation.js +++ b/wqflask/wqflask/static/new/javascript/validation.js @@ -1,47 +1,65 @@ // Generated by CoffeeScript 1.7.1 -$(function() { - var remove_samples_is_valid, validate_remove_samples; - remove_samples_is_valid = function(input) { - var new_splats, pattern, splat, splats, _i, _len; - if (_.trim(input).length === 0) { +(function() { + $(function() { + var remove_samples_is_valid, validate_pylmm_permutation, validate_remove_samples; + remove_samples_is_valid = function(input) { + var new_splats, pattern, splat, splats, _i, _len; + if (_.trim(input).length === 0) { + return true; + } + splats = input.split(","); + new_splats = (function() { + var _i, _len, _results; + _results = []; + for (_i = 0, _len = splats.length; _i < _len; _i++) { + input = splats[_i]; + _results.push(_.trim(input)); + } + return _results; + })(); + console.log("new_splats:", new_splats); + pattern = /^\d+\s*(?:-\s*\d+)?\s*$/; + for (_i = 0, _len = new_splats.length; _i < _len; _i++) { + splat = new_splats[_i]; + console.log("splat is:", splat); + if (!splat.match(pattern)) { + return false; + } + } return true; - } - splats = input.split(","); - new_splats = (function() { - var _i, _len, _results; - _results = []; - for (_i = 0, _len = splats.length; _i < _len; _i++) { - input = splats[_i]; - _results.push(_.trim(input)); + }; + validate_remove_samples = function() { + + /* + Check if input for the remove samples function is valid and notify the user if not + */ + var input; + input = $('#remove_samples_field').val(); + console.log("input is:", input); + if (remove_samples_is_valid(input)) { + console.log("input is valid"); + return $('#remove_samples_invalid').hide(); + } else { + console.log("input isn't valid"); + return $('#remove_samples_invalid').show(); } - return _results; - })(); - console.log("new_splats:", new_splats); - pattern = /^\d+\s*(?:-\s*\d+)?\s*$/; - for (_i = 0, _len = new_splats.length; _i < _len; _i++) { - splat = new_splats[_i]; - console.log("splat is:", splat); - if (!splat.match(pattern)) { - return false; + }; + validate_pylmm_permutation = function() { + + /* + Check if number of permutations is high (and will take long to compute) + */ + var input; + input = $('input[name=num_perm_pylmm]').val(); + console.log("input:", input); + if (input > 20) { + return $('#permutations_alert').show(); + } else { + return $('#permutations_alert').hide(); } - } - return true; - }; - validate_remove_samples = function() { + }; + $('input[name=num_perm_pylmm]').change(validate_pylmm_permutation); + return $('#remove_samples_field').change(validate_remove_samples); + }); - /* - Check if input for the remove samples function is valid and notify the user if not - */ - var input; - input = $('#remove_samples_field').val(); - console.log("input is:", input); - if (remove_samples_is_valid(input)) { - console.log("input is valid"); - return $('#remove_samples_invalid').hide(); - } else { - console.log("input isn't valid"); - return $('#remove_samples_invalid').show(); - } - }; - return $('#remove_samples_field').change(validate_remove_samples); -}); +}).call(this); diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html index 61fb98de..d6426f0c 100755 --- a/wqflask/wqflask/templates/show_trait_mapping_tools.html +++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html @@ -151,8 +151,12 @@ <div class="control-group mapping_method_fields"> <label for="mapping_permutations" class="control-label">Permutations (n)</label> <div class="controls"> - <input name="num_perm_pylmm" value="2000" type="text" /> + <input name="num_perm_pylmm" value="20" type="text" /> </div> + + </div> + <div id="permutations_alert" class="alert alert-error" style="display:none;"> + Please be aware that permutations can take a very long time (~20 minutes for 500 permutations) </div> <div class="control-group" id="display_all_div"> <label class="control-label">Manhattan Plot</label> |