diff options
| -rw-r--r-- | wqflask/wqflask/marker_regression/marker_regression.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index a1065adc..d2b27991 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -59,6 +59,7 @@ class MarkerRegression(object): primary_sample_names = list(all_samples_ordered) for sample in self.dataset.group.samplelist: + # sample is actually the name of an individual in_trait_data = False for item in self.this_trait.data: if self.this_trait.data[item].name == sample: @@ -68,9 +69,10 @@ class MarkerRegression(object): in_trait_data = True break if not in_trait_data: - value = start_vars['value:' + sample] - self.samples.append(sample) - self.vals.append(value) + value = start_vars.get('value:' + sample) + if value: + self.samples.append(sample) + self.vals.append(value) self.mapping_method = start_vars['method'] if start_vars['manhattan_plot'] == "True": |