diff options
| -rw-r--r-- | misc/gn_installation_notes.txt | 5 | ||||
| -rwxr-xr-x | wqflask/base/data_set.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/lmm.py | 1 |
3 files changed, 6 insertions, 1 deletions
diff --git a/misc/gn_installation_notes.txt b/misc/gn_installation_notes.txt index 91fe1781..6329586f 100644 --- a/misc/gn_installation_notes.txt +++ b/misc/gn_installation_notes.txt @@ -320,4 +320,9 @@ Run web server: Run server: python runserver.py +=========================================== + +To do full upgrade (as opposed to apt-get upgrade) +sudo aptitude full-upgrade + =========================================== \ No newline at end of file diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 188a94a2..ffc77299 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -400,7 +400,6 @@ class DataSet(object): # return self._group - def retrieve_other_names(self): """ If the data set name parameter is not found in the 'Name' field of the data set table, diff --git a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py index 446683a4..bca90486 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/lmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/lmm.py @@ -462,6 +462,7 @@ class LMM: x = True - np.isnan(Y) #pdb.set_trace() if not x.sum() == len(Y): + print("Removing %d missing values from Y\n" % ((True - x).sum())) if self.verbose: sys.stderr.write("Removing %d missing values from Y\n" % ((True - x).sum())) Y = Y[x] K = K[x,:][:,x] |