diff options
| -rwxr-xr-x | wqflask/wqflask/templates/show_trait_mapping_tools.html | 108 |
1 files changed, 2 insertions, 106 deletions
diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html index 80bc6509..3c6cd62a 100755 --- a/wqflask/wqflask/templates/show_trait_mapping_tools.html +++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html @@ -13,7 +13,7 @@ <li class="rqtl-geno-tab mapping-tab {% if dataset.group.mapping_id == '3' %}active{% endif %}"> <a href="#rqtl_geno" data-toggle="tab">R/qtl</a> </li> - <li class="rqtl-pair-tab mapping-tab {% if dataset.group.mapping_id == '3' %}active{% endif %}"> + <li class="rqtl-pair-tab mapping-tab"> <a href="#rqtl_pair" data-toggle="tab">Pair Scan</a> </li> {% elif mapping_method == "QTLReaper" %} @@ -352,7 +352,7 @@ </div> </div> </div> - <div class="tab-pane {% if dataset.group.mapping_id == '3' %}active{% endif %}" id="rqtl_pair"> + <div class="tab-pane" id="rqtl_pair"> <div class="form-horizontal section-form-div"> {% if genofiles and genofiles|length > 0 %} <div class="mapping_method_fields form-group"> @@ -456,110 +456,6 @@ </div> </div> </div> - <div class="tab-pane {% if dataset.group.mapping_id == '3' %}active{% endif %}" id="rqtl_pair"> - <div class="form-horizontal section-form-div"> - {% if genofiles and genofiles|length > 0 %} - <div class="mapping_method_fields form-group"> - <label for="genofiles" class="col-xs-3 control-label">Genotypes</label> - <div class="col-xs-6 controls"> - <select id="genofile_rqtl_geno" class="form-control"> - {% for item in genofiles %} - <option value="{{item['location']}}:{{item['title']}}">{{item['title']}}</option> - {% endfor %} - </select> - </div> - </div> - {% endif %} - <div class="mapping_method_fields form-group"> - <label for="mapping_permutations" class="col-xs-3 control-label">Permutations</label> - <div class="col-xs-4 controls"> - <input name="num_perm_rqtl_geno" value="200" type="text" class="form-control"> - </div> - </div> - {% if sample_groups[0].attributes|length > 0 %} - <div class="mapping_method_fields form-group"> - <label class="col-xs-3 control-label">Stratified</label> - <div class="col-xs-6 controls"> - <label class="radio-inline"> - <input type="radio" name="perm_strata" value="True" checked=""> - Yes - </label> - <label class="radio-inline"> - <input type="radio" name="perm_strata" value="False" > - No - </label> - </div> - </div> - {% endif %} - <div class="mapping_method_fields form-group"> - <label for="control_for" class="col-xs-3 control-label">Control for</label> - <div class="col-xs-6 controls"> - <input name="control_rqtl_geno" value="{% if dataset.type == 'ProbeSet' and this_trait.locus_chr != '' %}{{ nearest_marker }}{% endif %}" type="text" class="form-control cofactor-input" /> - <label class="radio-inline"> - <input type="radio" name="do_control_rqtl" value="true"> - Yes - </label> - <label class="radio-inline"> - <input type="radio" name="do_control_rqtl" value="false" checked=""> - No - </label> - </div> - </div> - <div class="mapping_method_fields form-group"> - <label for="mapmodel_rqtl_geno" class="col-xs-3 control-label">Model</label> - <div class="col-xs-4 controls"> - <select id="mapmodel_rqtl_geno" name="mapmodel_rqtl_geno" class="form-control"> - <option value="normal">Normal</option> - {% if binary == "true" %}<option value="binary">Binary</option>{% endif %} - <!--<option value="2part">2-part</option>--> - <option value="np">Non-parametric</option> - </select> - </div> - </div> - <div class="mapping_method_fields form-group"> - <label for="mapmethod_rqtl_geno" class="col-xs-3 control-label">Method</label> - <div class="col-xs-6 controls"> - <select id="mapmethod_rqtl_geno" name="mapmethod_rqtl_geno" class="form-control"> - <option value="hk" selected>Haley-Knott</option> - <option value="ehk">Extended Haley-Knott</option> - <option value="mr">Marker Regression</option> - <option value="em">Expectation-Maximization</option> - <option value="imp">Imputation</option> - </select> - </div> - </div> - <div id="missing_geno_div" class="mapping_method_fields form-group" style="display: none;"> - <label for="missing_genotypes" class="col-xs-3 control-label"></label> - <div class="col-xs-6 controls"> - <select id="missing_genotype" name="missing_genotypes" class="form-control"> - <option value="mr">Remove Samples w/o Genotypes</option> - <option value="mr-imp">Single Imputation</option> - <option value="mr-argmax">Imputation w/ Viterbi Algorithm</option> - </select> - </div> - </div> - <div class="mapping_method_fields form-group"> - <label class="col-xs-3 control-label">Covariates<br><span class="covar-text">Select covariate(s) from a collection</span></label> - <div class="col-xs-8 covar-options"> - {% if g.user_session.num_collections < 1 %} - No collections available. Please add traits to a collection to use them as covariates. - {% else %} - <div class="select-covar-div"> - <button type="button" class="btn btn-default select-covar-button select_covariates">Select</button> - <button type="button" class="btn btn-default select-covar-button remove_covariates">Remove</button> - </div> - <textarea rows="3" cols="50" readonly placeholder="No covariates selected" class="selected-covariates"></textarea> - {% endif %} - </div> - </div> - <div class="mapping_method_fields form-group"> - <label class="col-xs-3 control-label"></label> - <div class="col-xs-6 controls"> - <button id="rqtl_pair_compute" class="btn submit_special btn-success" data-url="/marker_regression" title="Compute Pair Scan" value="Compute">Compute</button> - </div> - </div> - </div> - </div> {% endif %} {% endfor %} </div> |