diff options
| -rw-r--r-- | wqflask/wqflask/auwerx/phewas_analysis.py | 3 |
1 files changed, 1 insertions, 2 deletions
diff --git a/wqflask/wqflask/auwerx/phewas_analysis.py b/wqflask/wqflask/auwerx/phewas_analysis.py index b9789404..e9455fba 100644 --- a/wqflask/wqflask/auwerx/phewas_analysis.py +++ b/wqflask/wqflask/auwerx/phewas_analysis.py @@ -31,7 +31,7 @@ r_load = ro.r["load"] # Map the head function r_colnames = ro.r["colnames"] # Map the colnames function r_list = ro.r["list"] # Map the list function r_c = ro.r["c"] # Map the c (combine) function -r_print = ro.r["print"] # Map the c (combine) function +r_print = ro.r["print"] # Map the print function r_seq = ro.r["seq"] # Map the rep (repeat) function class PheWAS(object): @@ -86,7 +86,6 @@ class PheWAS(object): rnames = r_seq(1, len(parser.markers)) # Create the snp aligner object out of the BXD genotypes snpaligner = ro.r.matrix(snpinfo, nrow=len(parser.markers), dimnames = r_list(rnames, r_c("SNP", "Chr", "Pos")), ncol = 3, byrow=True) - #r_write_table(snpaligner, "~/snpaligner_GN2.txt", row_names=False) # Create the phenotype aligner object using R phenoaligner = self.r_create_Pheno_aligner() |