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-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py6
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index d04f9b94..7376a1d5 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -150,8 +150,10 @@ if options.geno:
wrln("# Phenotypes = "+str(len(num_snps)))
def out(i,x):
- # print(i,x)
- pass
+ wr(str(i)+"\t")
+ for v in x:
+ wr("\t".join(str(v)))
+ wr("\n")
snps = plink.readbed(options.geno+'.bed',num_inds, out)
# for i in range(num_snps):