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-rw-r--r--.github/workflows/main.yml69
1 files changed, 0 insertions, 69 deletions
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
deleted file mode 100644
index 0cf4557f..00000000
--- a/.github/workflows/main.yml
+++ /dev/null
@@ -1,69 +0,0 @@
-name: tests
-
-# Run actions when pushing to the testing branch or when you create a
-# PR against it
-on:
- push:
- branches: [ testing ]
- pull_request:
- branches: [ testing ]
-
-jobs:
- unittest:
- runs-on: ubuntu-latest
- container: bonfacekilz/genenetwork2:latest
-
- steps:
- # First start with mariadb set then checkout. The checkout gives
- # the mysqld enough time to start
- - name: Set up mariadb
- run: |
- mysql_install_db --user=mysql --datadir=/usr/local/mysql
- # Wait for the mysqld_safe process to start
- mysqld_safe --user=mysql --datadir=/usr/local/mysql &
-
- # Use v1 of checkout since v2 fails
- - name: Checkout Project
- uses: actions/checkout@v1
-
- # Redis is required by some of the tests 6379
- - name: Start Redis
- run: |
- /gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server
-
- # Initialise the tables
- - name: Bootstrap tables
- run: |
- mysql -u root -e "SHOW DATABASES;"
- mysql -u root -e "CREATE DATABASE db_webqtl_s;"
- mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';"
- mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;"
-
- - name: Start Genenetwork as a Background Task
- run: |
- /gn2-profile/bin/screen -dm bash -c "env GN2_PROFILE=/gn2-profile \
- TMPDIR=/tmp SERVER_PORT=5004 \
- WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
- GN_PROXY_URL='http://localhost:8080' \
- GN3_LOCAL_URL='http://localhost:8081' \
- GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
- etc/default_settings.py"
-
- - name: Run the unit tests
- run: |
- env GN2_PROFILE=/gn2-profile \
- TMPDIR=/tmp SERVER_PORT=5004 \
- WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
- GN_PROXY_URL='http://localhost:8080' \
- GN3_LOCAL_URL='http://localhost:8081' \
- GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
- etc/default_settings.py -c -m unittest discover -v
-
- # - name: Test for Broken Links
- # run: |
- # env GN2_PROFILE=/gn2-profile \
- # TMPDIR=/tmp\
- # WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
- # GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
- # etc/default_settings.py -c \
- # $PWD/test/requests/links_scraper/genelinks.py