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authorZachary Sloan2012-08-23 16:01:46 -0500
committerZachary Sloan2012-08-23 16:01:46 -0500
commitbc1c2a65b93134f3676188bbee6bb69ee82c77be (patch)
treea67dbe2b20375df2690978c744b076b6d0f6d5c6 /wqflask
parentee24468b3ad5575c4f7ba06aa3319bdab3a34c6c (diff)
parent300f2fec72ce8e7143e0c954074690224f6d0f70 (diff)
downloadgenenetwork2-bc1c2a65b93134f3676188bbee6bb69ee82c77be.tar.gz
Merge branch 'flask' of https://github.com/OriginalPenguin/genenetwork into flask
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/cfg/__init__.py0
-rw-r--r--wqflask/cfg/default_settings.py1
-rw-r--r--wqflask/wqflask/__init__.py4
-rw-r--r--wqflask/wqflask/search_results.py2
-rwxr-xr-xwqflask/wqflask/show_trait/DataEditingPage.py12
-rw-r--r--wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee98
-rw-r--r--wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js125
-rw-r--r--wqflask/wqflask/static/new/js_external/underscore-min.js32
-rw-r--r--wqflask/wqflask/static/new/js_external/underscore.string.min.js1
-rw-r--r--wqflask/wqflask/templates/base.html2
-rw-r--r--wqflask/wqflask/templates/trait_data_and_analysis.html5
-rw-r--r--wqflask/wqflask/templates/whats_new.html29
-rw-r--r--wqflask/wqflask/views.py13
-rw-r--r--wqflask/wqflask/yaml_data/whats_new.yaml26
14 files changed, 274 insertions, 76 deletions
diff --git a/wqflask/cfg/__init__.py b/wqflask/cfg/__init__.py
new file mode 100644
index 00000000..e69de29b
--- /dev/null
+++ b/wqflask/cfg/__init__.py
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
new file mode 100644
index 00000000..30ad51d1
--- /dev/null
+++ b/wqflask/cfg/default_settings.py
@@ -0,0 +1 @@
+LOGFILE = """/tmp/flask_gn_log"""
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py
index a6119dcc..a7492e77 100644
--- a/wqflask/wqflask/__init__.py
+++ b/wqflask/wqflask/__init__.py
@@ -9,6 +9,10 @@ from utility import formatting
app = Flask(__name__)
+# See http://flask.pocoo.org/docs/config/#configuring-from-files
+app.config.from_object('cfg.default_settings')
+app.config.from_envvar('WQFLASK_SETTINGS')
+
app.jinja_env.globals.update(
numify = formatting.numify
)
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index ce7a6eef..d393d0c1 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -36,7 +36,7 @@ from utility import webqtlUtil
from dbFunction import webqtlDatabaseFunction
import logging
-logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO)
+logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
_log = logging.getLogger("search")
_ch = logging.StreamHandler()
diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py
index 610124ae..68de5ae4 100755
--- a/wqflask/wqflask/show_trait/DataEditingPage.py
+++ b/wqflask/wqflask/show_trait/DataEditingPage.py
@@ -227,9 +227,15 @@ class DataEditingPage(templatePage):
# """)
self.basic_table['columns'] = yaml.load("""
- - All Cases
- - BXD Only
- - Non-BXD Only
+ -
+ n: All Cases
+ t: all
+ -
+ n: BXD Only
+ t: primary
+ -
+ n: Non-BXD Only
+ t: other
""")
print(pf(self.basic_table))
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
index 2c912f05..bbee9c5a 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
@@ -1,6 +1,7 @@
console.log("start_b")
-isNumber = (o) ->
+# this is our isNumber, do not confuse with the underscore.js one
+is_number = (o) ->
return ! isNaN (o-0) && o != null
$ ->
@@ -20,46 +21,73 @@ $ ->
$(".stats_mdp").change(stats_mdp_change)
- mean = (the_values)->
- total = 0
- total += value for value in the_values
- the_mean = total / the_values.length
- the_mean = the_mean.toFixed(2)
- current_mean = parseFloat($("#mean_value").html).toFixed(2)
- if the_mean != current_mean
- $("#mean_value").html(the_mean).effect("highlight")
-
- n_of_samples = the_values.length
- current_n_of_samples = $("#n_of_samples_value").html()
- console.log("cnos:", current_n_of_samples)
- console.log("n_of_samples:", n_of_samples)
- if n_of_samples != current_n_of_samples
- $("#n_of_samples_value").html(current_n_of_samples).effect("highlight")
+ update_stat_values = (the_values)->
+ for category in ['primary', 'other', 'all']
+ id = "#" + process_id(category, "mean")
+ console.log("id:", id)
+ total = 0
+ total += value for value in the_values[category]
+ the_mean = total / the_values[category].length
+ the_mean = the_mean.toFixed(2)
+ console.log("aaa")
+ in_box = $(id).html
+ console.log("in_box:", in_box)
+ current_mean = parseFloat($(in_box)).toFixed(2)
+ console.log("the_mean:", the_mean)
+ console.log("current_mean:", current_mean)
+ console.log("aab")
+ if the_mean != current_mean
+ console.log("setting mean")
+ $(id).html(the_mean).effect("highlight")
+ console.log("should be set")
+
+ n_of_samples = the_values[category].length
+ id = "#" + process_id(category, "n_of_samples")
+ console.log("n_of_samples id:", id)
+ current_n_of_samples = $(id).html()
+ console.log("cnos:", current_n_of_samples)
+ console.log("n_of_samples:", n_of_samples)
+ if n_of_samples != current_n_of_samples
+ $(id).html(n_of_samples).effect("highlight")
edit_data_change = ->
- the_values = []
- values = $('#primary').find(".edit_strain_value")
+ the_values =
+ primary: []
+ other: []
+ all: []
+ console.log("at beginning:", the_values)
+ values = $('#value_table').find(".edit_strain_value")
#console.log("values are:", values)
for value in values
real_value = $(value).val()
#console.log("parent is:", $(value).closest("tr"))
row = $(value).closest("tr")
+ console.log("row is:", row)
+ console.log("row[0].id is:", row[0].id)
+ category = row[0].id
checkbox = $(row).find(".edit_strain_checkbox")
checked = $(checkbox).attr('checked')
if not checked
console.log("Not checked")
continue
- if isNumber(real_value) and real_value != ""
- the_values.push(parseFloat(real_value))
- mean(the_values)
+ if is_number(real_value) and real_value != ""
+ real_value = parseFloat(real_value)
+ if _(category).startsWith("Primary")
+ the_values.primary.push(real_value)
+ else if _(category).startsWith("Other")
+ the_values.other.push(real_value)
+ the_values.all.push(real_value)
+ console.log("torwads end:", the_values)
+ update_stat_values(the_values)
make_table = ->
header = "<thead><tr><th>&nbsp;</th>"
for column in basic_table['columns']
- the_id = process_id("column_" + column)
- header += """<th id="#{ the_id }">#{ column }</th>"""
+ console.log("column:", column)
+ the_id = process_id("column", column.t)
+ header += """<th id="#{ the_id }">#{ column.n }</th>"""
header += "</thead>"
rows = [
@@ -90,9 +118,9 @@ $ ->
row_line += """<td id="#{ row.vn }">#{ row.pretty }</td>"""
for column in basic_table['columns']
console.log("apple:", column)
- the_id = process_id(column + "_" + row.vn)
+ the_id = process_id(column.t, row.vn)
console.log("the_id:", the_id)
- row_line += """<td id="#{ the_id }">&nbsp;</td>"""
+ row_line += """<td id="#{ the_id }">foo</td>"""
row_line += """</tr>"""
console.log("row line:", row_line)
the_rows += row_line
@@ -103,14 +131,22 @@ $ ->
- process_id = (value) ->
+ process_id = (values...) ->
### Make an id or a class valid javascript by, for example, eliminating spaces ###
- console.log("value:", value)
- value = value.replace(" ", "_")
- return value
-
- $('#primary').change(edit_data_change)
+ processed = ""
+ for value in values
+ console.log("value:", value)
+ value = value.replace(" ", "_")
+ if processed.length
+ processed += "-"
+ processed += value
+ return processed
+
+ _.mixin(_.str.exports()); # Add string fuctions directly to underscore
+ $('#value_table').change(edit_data_change)
console.log("loaded")
console.log("basic_table is:", basic_table)
make_table()
+ edit_data_change() # Set the values at the beginning
+ #$("#all-mean").html('foobar8')
console.log("end")
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
index c288f11f..1a067820 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
@@ -1,15 +1,16 @@
// Generated by CoffeeScript 1.3.3
(function() {
- var isNumber;
+ var is_number,
+ __slice = [].slice;
console.log("start_b");
- isNumber = function(o) {
+ is_number = function(o) {
return !isNaN((o - 0) && o !== null);
};
$(function() {
- var edit_data_change, hide_tabs, make_table, mean, process_id, stats_mdp_change;
+ var edit_data_change, hide_tabs, make_table, process_id, stats_mdp_change, update_stat_values;
hide_tabs = function(start) {
var x, _i, _results;
_results = [];
@@ -26,46 +27,82 @@
return $("#stats_tabs" + selected).show();
};
$(".stats_mdp").change(stats_mdp_change);
- mean = function(the_values) {
- var current_mean, current_n_of_samples, n_of_samples, the_mean, total, value, _i, _len;
- total = 0;
- for (_i = 0, _len = the_values.length; _i < _len; _i++) {
- value = the_values[_i];
- total += value;
- }
- the_mean = total / the_values.length;
- the_mean = the_mean.toFixed(2);
- current_mean = parseFloat($("#mean_value").html).toFixed(2);
- if (the_mean !== current_mean) {
- $("#mean_value").html(the_mean).effect("highlight");
- }
- n_of_samples = the_values.length;
- current_n_of_samples = $("#n_of_samples_value").html();
- console.log("cnos:", current_n_of_samples);
- console.log("n_of_samples:", n_of_samples);
- if (n_of_samples !== current_n_of_samples) {
- return $("#n_of_samples_value").html(current_n_of_samples).effect("highlight");
+ update_stat_values = function(the_values) {
+ var category, current_mean, current_n_of_samples, id, in_box, n_of_samples, the_mean, total, value, _i, _j, _len, _len1, _ref, _ref1, _results;
+ _ref = ['primary', 'other', 'all'];
+ _results = [];
+ for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+ category = _ref[_i];
+ id = "#" + process_id(category, "mean");
+ console.log("id:", id);
+ total = 0;
+ _ref1 = the_values[category];
+ for (_j = 0, _len1 = _ref1.length; _j < _len1; _j++) {
+ value = _ref1[_j];
+ total += value;
+ }
+ the_mean = total / the_values[category].length;
+ the_mean = the_mean.toFixed(2);
+ console.log("aaa");
+ in_box = $(id).html;
+ console.log("in_box:", in_box);
+ current_mean = parseFloat($(in_box)).toFixed(2);
+ console.log("the_mean:", the_mean);
+ console.log("current_mean:", current_mean);
+ console.log("aab");
+ if (the_mean !== current_mean) {
+ console.log("setting mean");
+ $(id).html(the_mean).effect("highlight");
+ console.log("should be set");
+ }
+ n_of_samples = the_values[category].length;
+ id = "#" + process_id(category, "n_of_samples");
+ console.log("n_of_samples id:", id);
+ current_n_of_samples = $(id).html();
+ console.log("cnos:", current_n_of_samples);
+ console.log("n_of_samples:", n_of_samples);
+ if (n_of_samples !== current_n_of_samples) {
+ _results.push($(id).html(n_of_samples).effect("highlight"));
+ } else {
+ _results.push(void 0);
+ }
}
+ return _results;
};
edit_data_change = function() {
- var checkbox, checked, real_value, row, the_values, value, values, _i, _len;
- the_values = [];
- values = $('#primary').find(".edit_strain_value");
+ var category, checkbox, checked, real_value, row, the_values, value, values, _i, _len;
+ the_values = {
+ primary: [],
+ other: [],
+ all: []
+ };
+ console.log("at beginning:", the_values);
+ values = $('#value_table').find(".edit_strain_value");
for (_i = 0, _len = values.length; _i < _len; _i++) {
value = values[_i];
real_value = $(value).val();
row = $(value).closest("tr");
+ console.log("row is:", row);
+ console.log("row[0].id is:", row[0].id);
+ category = row[0].id;
checkbox = $(row).find(".edit_strain_checkbox");
checked = $(checkbox).attr('checked');
if (!checked) {
console.log("Not checked");
continue;
}
- if (isNumber(real_value) && real_value !== "") {
- the_values.push(parseFloat(real_value));
+ if (is_number(real_value) && real_value !== "") {
+ real_value = parseFloat(real_value);
+ if (_(category).startsWith("Primary")) {
+ the_values.primary.push(real_value);
+ } else if (_(category).startsWith("Other")) {
+ the_values.other.push(real_value);
+ }
+ the_values.all.push(real_value);
}
}
- return mean(the_values);
+ console.log("torwads end:", the_values);
+ return update_stat_values(the_values);
};
make_table = function() {
var column, header, row, row_line, rows, table, the_id, the_rows, _i, _j, _k, _len, _len1, _len2, _ref, _ref1;
@@ -73,8 +110,9 @@
_ref = basic_table['columns'];
for (_i = 0, _len = _ref.length; _i < _len; _i++) {
column = _ref[_i];
- the_id = process_id("column_" + column);
- header += "<th id=\"" + the_id + "\">" + column + "</th>";
+ console.log("column:", column);
+ the_id = process_id("column", column.t);
+ header += "<th id=\"" + the_id + "\">" + column.n + "</th>";
}
header += "</thead>";
rows = [
@@ -104,9 +142,9 @@
for (_k = 0, _len2 = _ref1.length; _k < _len2; _k++) {
column = _ref1[_k];
console.log("apple:", column);
- the_id = process_id(column + "_" + row.vn);
+ the_id = process_id(column.t, row.vn);
console.log("the_id:", the_id);
- row_line += "<td id=\"" + the_id + "\">&nbsp;</td>";
+ row_line += "<td id=\"" + the_id + "\">foo</td>";
}
row_line += "</tr>";
console.log("row line:", row_line);
@@ -117,17 +155,30 @@
console.log("table is:", table);
return $("#stats_table").append(table);
};
- process_id = function(value) {
+ process_id = function() {
+ var processed, value, values, _i, _len;
+ values = 1 <= arguments.length ? __slice.call(arguments, 0) : [];
/* Make an id or a class valid javascript by, for example, eliminating spaces
*/
- console.log("value:", value);
- value = value.replace(" ", "_");
- return value;
+
+ processed = "";
+ for (_i = 0, _len = values.length; _i < _len; _i++) {
+ value = values[_i];
+ console.log("value:", value);
+ value = value.replace(" ", "_");
+ if (processed.length) {
+ processed += "-";
+ }
+ processed += value;
+ }
+ return processed;
};
- $('#primary').change(edit_data_change);
+ _.mixin(_.str.exports());
+ $('#value_table').change(edit_data_change);
console.log("loaded");
console.log("basic_table is:", basic_table);
make_table();
+ edit_data_change();
return console.log("end");
});
diff --git a/wqflask/wqflask/static/new/js_external/underscore-min.js b/wqflask/wqflask/static/new/js_external/underscore-min.js
new file mode 100644
index 00000000..5a0cb3b0
--- /dev/null
+++ b/wqflask/wqflask/static/new/js_external/underscore-min.js
@@ -0,0 +1,32 @@
+// Underscore.js 1.3.3
+// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
+// Underscore is freely distributable under the MIT license.
+// Portions of Underscore are inspired or borrowed from Prototype,
+// Oliver Steele's Functional, and John Resig's Micro-Templating.
+// For all details and documentation:
+// http://documentcloud.github.com/underscore
+(function(){function r(a,c,d){if(a===c)return 0!==a||1/a==1/c;if(null==a||null==c)return a===c;a._chain&&(a=a._wrapped);c._chain&&(c=c._wrapped);if(a.isEqual&&b.isFunction(a.isEqual))return a.isEqual(c);if(c.isEqual&&b.isFunction(c.isEqual))return c.isEqual(a);var e=l.call(a);if(e!=l.call(c))return!1;switch(e){case "[object String]":return a==""+c;case "[object Number]":return a!=+a?c!=+c:0==a?1/a==1/c:a==+c;case "[object Date]":case "[object Boolean]":return+a==+c;case "[object RegExp]":return a.source==
+c.source&&a.global==c.global&&a.multiline==c.multiline&&a.ignoreCase==c.ignoreCase}if("object"!=typeof a||"object"!=typeof c)return!1;for(var f=d.length;f--;)if(d[f]==a)return!0;d.push(a);var f=0,g=!0;if("[object Array]"==e){if(f=a.length,g=f==c.length)for(;f--&&(g=f in a==f in c&&r(a[f],c[f],d)););}else{if("constructor"in a!="constructor"in c||a.constructor!=c.constructor)return!1;for(var h in a)if(b.has(a,h)&&(f++,!(g=b.has(c,h)&&r(a[h],c[h],d))))break;if(g){for(h in c)if(b.has(c,h)&&!f--)break;
+g=!f}}d.pop();return g}var s=this,I=s._,o={},k=Array.prototype,p=Object.prototype,i=k.slice,J=k.unshift,l=p.toString,K=p.hasOwnProperty,y=k.forEach,z=k.map,A=k.reduce,B=k.reduceRight,C=k.filter,D=k.every,E=k.some,q=k.indexOf,F=k.lastIndexOf,p=Array.isArray,L=Object.keys,t=Function.prototype.bind,b=function(a){return new m(a)};"undefined"!==typeof exports?("undefined"!==typeof module&&module.exports&&(exports=module.exports=b),exports._=b):s._=b;b.VERSION="1.3.3";var j=b.each=b.forEach=function(a,
+c,d){if(a!=null)if(y&&a.forEach===y)a.forEach(c,d);else if(a.length===+a.length)for(var e=0,f=a.length;e<f;e++){if(e in a&&c.call(d,a[e],e,a)===o)break}else for(e in a)if(b.has(a,e)&&c.call(d,a[e],e,a)===o)break};b.map=b.collect=function(a,c,b){var e=[];if(a==null)return e;if(z&&a.map===z)return a.map(c,b);j(a,function(a,g,h){e[e.length]=c.call(b,a,g,h)});if(a.length===+a.length)e.length=a.length;return e};b.reduce=b.foldl=b.inject=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(A&&
+a.reduce===A){e&&(c=b.bind(c,e));return f?a.reduce(c,d):a.reduce(c)}j(a,function(a,b,i){if(f)d=c.call(e,d,a,b,i);else{d=a;f=true}});if(!f)throw new TypeError("Reduce of empty array with no initial value");return d};b.reduceRight=b.foldr=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(B&&a.reduceRight===B){e&&(c=b.bind(c,e));return f?a.reduceRight(c,d):a.reduceRight(c)}var g=b.toArray(a).reverse();e&&!f&&(c=b.bind(c,e));return f?b.reduce(g,c,d,e):b.reduce(g,c)};b.find=b.detect=function(a,
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b="ąàáäâãćęèéëêìíïîłńòóöôõùúüûñçżź",c="aaaaaaceeeeeiiiilnooooouuuunczz",d=new RegExp(i(b),"g");return a=(""+a).toLowerCase(),a=a.replace(d,function(a){var d=b.indexOf(a);return c.charAt(d)||"-"}),o.dasherize(a.replace(/[^\w\s-]/g,""))},surround:function(a,b){return[b,a,b].join("")},quote:function(a){return o.surround(a,'"')},exports:function(){var a={};for(var b in this){if(!this.hasOwnProperty(b)||b.match(/^(?:include|contains|reverse)$/))continue;a[b]=this[b]}return a},repeat:function(a,b,c){b=~~b;if(c==null)return f(a+"",b);for(var d=[];b>0;d[--b]=a);return d.join(c)},levenshtein:j};o.strip=o.trim,o.lstrip=o.ltrim,o.rstrip=o.rtrim,o.center=o.lrpad,o.rjust=o.lpad,o.ljust=o.rpad,o.contains=o.include,o.q=o.quote,typeof exports!="undefined"?(typeof module!="undefined"&&module.exports&&(module.exports=o),exports._s=o):typeof define=="function"&&define.amd?define("underscore.string",[],function(){return o}):(a._=a._||{},a._.string=a._.str=o)}(this); \ No newline at end of file
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index 4050164d..7d9218ed 100644
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -112,7 +112,7 @@
<Strong>Help</Strong></Span>
&nbsp;&nbsp;&nbsp;|&nbsp;&nbsp;&nbsp;
<Span Id= "menu_grp4" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp4'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp4'])" style="font-size:12px;font-family:verdana;color:#0000ae">
- <A Href="/whats_new.html" style="font-size:12px;font-family:verdana;color:#0000ae">
+ <A Href="/whats_new" style="font-size:12px;font-family:verdana;color:#0000ae">
<Strong>News</Strong></A></Span>
&nbsp;&nbsp;&nbsp;|&nbsp;&nbsp;&nbsp;
<Span Id= "menu_grp5" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp5'])" onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp5'])" style="font-size:12px;font-family:verdana;color:#0000ae">
diff --git a/wqflask/wqflask/templates/trait_data_and_analysis.html b/wqflask/wqflask/templates/trait_data_and_analysis.html
index 47d0827b..c951156a 100644
--- a/wqflask/wqflask/templates/trait_data_and_analysis.html
+++ b/wqflask/wqflask/templates/trait_data_and_analysis.html
@@ -3018,7 +3018,7 @@
<p id="sectionbody5"></p>
- <table class="target5" cellpadding="0" cellspacing="0" width="100%">
+ <table class="target5" id="value_table" cellpadding="0" cellspacing="0" width="100%">
<tr>
<td>
<div>
@@ -3118,7 +3118,8 @@
basic_table = {{ basic_table | safe }}
</script>
- <script type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
+ <script type="text/javascript" src="/static/new/js_external/underscore-min.js"></script>-->
+ <script type="text/javascript" src="/static/new/js_external/underscore.string.min.js"></script>
<script type="text/javascript" src="/static/new/javascript/trait_data_and_analysis.js"></script>
diff --git a/wqflask/wqflask/templates/whats_new.html b/wqflask/wqflask/templates/whats_new.html
new file mode 100644
index 00000000..dca9e7b3
--- /dev/null
+++ b/wqflask/wqflask/templates/whats_new.html
@@ -0,0 +1,29 @@
+{% extends "base.html" %}
+{% block title %}GeneNetwork{% endblock %}
+{% block content %}
+<!-- Start of body -->
+
+ <TR>
+ <TD bgColor=#eeeeee class="solidBorder">
+ <Table width= "100%" cellSpacing=0 cellPadding=5><TR>
+ <!-- Body Start from Here -->
+ <TD valign="top" height="200" width="100%" bgcolor="#eeeeee">
+
+ <P class="title">Latest Updates and News from Genenetwork <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P>
+
+
+ {% for news_item in news_items %}
+ <h4>{{ news_item.title }} ({{ news_item.date }})</h4>
+ {{ news_item.details | safe }}
+ <br /><br />
+ {% endfor %}
+
+ <p />
+
+ </TD>
+ </TR>
+
+
+
+<!-- End of body -->
+{% endblock %}
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 852e6a16..1ed3c1fd 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -15,6 +15,8 @@ from base import webqtlFormData
from pprint import pformat as pf
+import yaml
+
print("latest blue")
@app.route("/")
@@ -53,7 +55,16 @@ def search():
return render_template("search_result_page.html", **the_search.__dict__)
-
+@app.route("/whats_new")
+def whats_new():
+ #variables = whats_new.whats_new()
+ with open("/home/sam/gene/wqflask/wqflask/yaml_data/whats_new.yaml") as fh:
+ contents = fh.read()
+ yamilized = yaml.safe_load(contents)
+ news_items = yamilized['news']
+ for news_item in news_items:
+ print("\nnews_item is: %s\n" % (news_item))
+ return render_template("whats_new.html", news_items=news_items)
@app.route("/showDatabaseBXD")
def showDatabaseBXD():
diff --git a/wqflask/wqflask/yaml_data/whats_new.yaml b/wqflask/wqflask/yaml_data/whats_new.yaml
new file mode 100644
index 00000000..8f41a8f2
--- /dev/null
+++ b/wqflask/wqflask/yaml_data/whats_new.yaml
@@ -0,0 +1,26 @@
+news:
+-
+ date: 2012-1-20
+ title: Mouse SNPs from dbSNP have been added to GeneNetwork
+ details:
+ 10 million mouse SNPs from dbSNP (build 128) have been added to Variant Browser.
+ They could be searched by name (e.g. rs31192936) (Implemented by Xiaodong Zhou and Ning Liu).
+
+-
+ date: 2012-1-20
+ title: Literature correlation has been update to 2011 version
+ details:
+ Dr. Ramin Homayouni and Dr. Lijing Xu kindly provide the 2011 version of mouse gene-gene
+ literature correlation matrix to GeneNetwork. (Implemented by Xiaodong Zhou).
+
+-
+ date: 2012-1-16
+ title: Expression data set for EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA ** has been entered in GeneNetwork
+ details:
+ Laboratory of Integrative and Systems Physiology
+ (<a href="http://auwerx-lab.epfl.ch/">LISP</a>).
+ This data set is not yet freely available for global analysis.
+ This data set has not yet been used or described in any publication.
+ Please contact Johan Auwerx or Evan Williams at evan.williams@epfl.ch
+ regarding use of these data. (Implemented by J Auwerx, E Williams, LA Rose,
+ RW Williams and A Centeno). \ No newline at end of file