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authorchristian2016-08-12 15:39:29 +0200
committerchristian2016-08-12 15:39:29 +0200
commitac3393872c6f87a8707c1925ef4927c7c0f83936 (patch)
tree82c20e946074ba69f4727271393fc2a3b5b0822a /wqflask
parent7d78c6099527bd35bf67ec0eee0f2ad90e43758c (diff)
downloadgenenetwork2-ac3393872c6f87a8707c1925ef4927c7c0f83936.tar.gz
Add genotype track
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/templates/marker_regression_gn1.html55
1 files changed, 53 insertions, 2 deletions
diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html
index 47e282cf..b9d1f4fe 100644
--- a/wqflask/wqflask/templates/marker_regression_gn1.html
+++ b/wqflask/wqflask/templates/marker_regression_gn1.html
@@ -369,6 +369,57 @@
                    tier_type: 'sequence',
                    provides_entrypoints: true
      });
+     BD.putSource({name: 'Genotype',
+                   /* controlURI: "http://test-gn2.genenetwork.org/api_pre1/genotype/mouse/BXD.json",*/
+                   /* URIBase: "http://test-gn2.genenetwork.org/api_pre1/genotype/mouse/",*/
+                   controlURI: "http://localhost:8880/genotype/mouse/BXD.json",
+                   URIBase: "http://localhost:8880/",
+                   tier_type:            'rqtl-genotype',
+                   pinned: true,
+                   transposed: true,
+                   style: [
+                       { type: "default",
+                         method: "U",
+                         style: { glyph: "BOX",
+                                  LINE: "0.5",
+                                  FGCOLOR: "black",
+                                  BGCOLOR: "white",
+                                  BGITEM: "true",
+                                  HEIGHT: "2",
+                                  BUMP: "true",
+                         }},
+                       { type: "default",
+                         method: "B",
+                         style: { glyph: "BOX",
+                                  LINE: "0.5",
+                                  FGCOLOR: "blue",
+                                  BGCOLOR: "blue",
+                                  BGITEM: "true",
+                                  HEIGHT: "2",
+                                  BUMP: "true",
+                         }},
+                       { type: "default",
+                         method: "H",
+                         style: { glyph: "BOX",
+                                  LINE: "0.5",
+                                  FGCOLOR: "green",
+                                  BGCOLOR: "green",
+                                  BGITEM: "true",
+                                  HEIGHT: "2",
+                                  BUMP: "true",
+                         }},
+                       { type: "default",
+                         method: "D",
+                         style: { glyph: "BOX",
+                                  LINE: "0.5",
+                                  FGCOLOR: "red",
+                                  BGCOLOR: "red",
+                                  BGITEM: "true",
+                                  HEIGHT: "2",
+                                  BUMP: "true",
+                         }},
+                   ]
+     });
      BD.putSource({name: 'QTL',
                    tier_type: 'qtl',
                    uri: 'http://localhost:5003/generated_text/{{csv_filename}}',
@@ -377,8 +428,8 @@
                        style: {
                            glyph: "LINEPLOT",
                            MIN: 0,
-                           MAX: 2.5,
-                           HEIGHT: 120,
+                           MAX: 3,
+                           HEIGHT: 200,
                            STEPS: 500,
                            COLOR1: "blue",
                        }