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authorFrederick Muriuki Muriithi2022-08-09 08:01:00 +0300
committerFrederick Muriuki Muriithi2022-08-09 08:01:00 +0300
commit523987604a3a2861864922630360bb4f387cfbbe (patch)
treeb08ee1f7f2e15fd030cce9bfee2b02fd23a00c0c /wqflask
parentf1044209224945762dbb27226a0c7dc2c6fa6085 (diff)
downloadgenenetwork2-523987604a3a2861864922630360bb4f387cfbbe.tar.gz
Fix circular import issue
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/correlation/correlation_gn3_api.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py
index e2346840..05210d9b 100644
--- a/wqflask/wqflask/correlation/correlation_gn3_api.py
+++ b/wqflask/wqflask/correlation/correlation_gn3_api.py
@@ -16,7 +16,6 @@ from gn3.commands import run_sample_corr_cmd
from gn3.computations.correlations import map_shared_keys_to_values
from gn3.computations.correlations import compute_all_lit_correlation
from gn3.computations.correlations import compute_tissue_correlation
-from wqflask.correlation.rust_correlation import compute_correlation_rust
from gn3.computations.correlations import fast_compute_all_sample_correlation
@@ -212,6 +211,8 @@ def compute_correlation(start_vars, method="pearson", compute_all=False):
if corr_type == "sample":
(this_trait_data, target_dataset_data) = fetch_sample_data(
start_vars, this_trait, this_dataset, target_dataset)
+ ## This import has to be inside the function to prevent circular imports
+ from wqflask.correlation.rust_correlation import compute_correlation_rust
rust_correlation_results = compute_correlation_rust(
start_vars, corr_type, method, corr_return_results)
correlation_results = rust_correlation_results["correlation_results"]