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| author | zsloan | 2020-12-02 14:27:39 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-02 14:27:39 -0600 |
| commit | 429602ad29c0f04fc8142dd48bc3c75c1412be59 (patch) | |
| tree | c8cf761ee94f557af3c320590d7c56bb43308232 /wqflask | |
| parent | 30d8f3a62618d6d0965badcbe294489a2807aebf (diff) | |
| download | genenetwork2-429602ad29c0f04fc8142dd48bc3c75c1412be59.tar.gz | |
Added trait URLs to search page export
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/export_traits.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/export_traits.py b/wqflask/wqflask/export_traits.py index 47a2000f..037de5a8 100644 --- a/wqflask/wqflask/export_traits.py +++ b/wqflask/wqflask/export_traits.py @@ -54,7 +54,7 @@ def export_search_results_csv(targs): trait_ob = retrieve_trait_info(trait_ob, trait_ob.dataset, get_qtl_info=True) trait_list.append(trait_ob) - table_headers = ['Index', 'Species', 'Group', 'Dataset', 'Record ID', 'Symbol', 'Description', 'ProbeTarget', 'PubMed_ID', 'Chr', 'Mb', 'Alias', 'Gene_ID', 'Homologene_ID', 'UniGene_ID', 'Strand_Probe', 'Probe_set_specificity', 'Probe_set_BLAT_score', 'Probe_set_BLAT_Mb_start', 'Probe_set_BLAT_Mb_end', 'QTL_Chr', 'QTL_Mb', 'Locus_at_Peak', 'Max_LRS', 'P_value_of_MAX', 'Mean_Expression'] + table_headers = ['Index', 'URL', 'Species', 'Group', 'Dataset', 'Record ID', 'Symbol', 'Description', 'ProbeTarget', 'PubMed_ID', 'Chr', 'Mb', 'Alias', 'Gene_ID', 'Homologene_ID', 'UniGene_ID', 'Strand_Probe', 'Probe_set_specificity', 'Probe_set_BLAT_score', 'Probe_set_BLAT_Mb_start', 'Probe_set_BLAT_Mb_end', 'QTL_Chr', 'QTL_Mb', 'Locus_at_Peak', 'Max_LRS', 'P_value_of_MAX', 'Mean_Expression'] traits_by_group = sort_traits_by_group(trait_list) @@ -86,6 +86,7 @@ def export_search_results_csv(targs): trait_symbol = "N/A" row_contents = [ i + 1, + "https://genenetwork.org/show_trait?trait_id=" + trait.name + "&dataset=" + trait.dataset.name, trait.dataset.group.species, trait.dataset.group.name, trait.dataset.name, |