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authorzsloan2020-12-09 16:18:07 -0600
committerzsloan2020-12-09 16:18:07 -0600
commit30e8aaad9672151c4b6bc43ea386d0d39ca131a7 (patch)
tree18fc8b4ba26f66feddeaf0c2ea473ea4e1dd4f4d /wqflask
parent66ea1d85feb8cb17a5e8ef9429b7f5353243d634 (diff)
downloadgenenetwork2-30e8aaad9672151c4b6bc43ea386d0d39ca131a7.tar.gz
Exchanged metadata and legend positions and made some changes to Y positioning for the metadata
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/marker_regression/display_mapping_results.py39
1 files changed, 24 insertions, 15 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py
index 08c2d750..9f778160 100644
--- a/wqflask/wqflask/marker_regression/display_mapping_results.py
+++ b/wqflask/wqflask/marker_regression/display_mapping_results.py
@@ -644,8 +644,10 @@ class DisplayMappingResults(object):
yTopOffset = max(90, yTopOffset)
else:
if self.legendChecked:
- if self.covariates != "" and self.controlLocus and self.doControl != "false":
- yTopOffset = max(120, yTopOffset)
+ if (self.mapping_method == "gemma" or self.mapping_method == "rqtl_geno") and self.covariates != "":
+ yTopOffset = max(115, yTopOffset)
+ elif self.mapping_method == "rqtl_geno" and self.controlLocus and self.doControl != "false" and self.covariates != "":
+ yTopOffset = max(130, yTopOffset)
else:
yTopOffset = max(100, yTopOffset)
else:
@@ -859,13 +861,12 @@ class DisplayMappingResults(object):
if self.legendChecked:
startPosY = 30
- nCol = 2
smallLabelFont = ImageFont.truetype(font=TREBUC_FILE, size=12*fontZoom)
- leftOffset = xLeftOffset+(nCol-1)*200
+ leftOffset = canvas.size[0] - xRightOffset - 190
im_drawer.rectangle(
xy=((leftOffset, startPosY-6), (leftOffset+12, startPosY+6)),
fill=YELLOW, outline=BLACK)
- im_drawer.text(xy=(leftOffset+ 20, startPosY+TEXT_Y_DISPLACEMENT),
+ im_drawer.text(xy=(canvas.size[0] - xRightOffset - 170, startPosY+TEXT_Y_DISPLACEMENT),
text='Frequency of the Peak LRS',
font=smallLabelFont, fill=BLACK)
@@ -1069,7 +1070,7 @@ class DisplayMappingResults(object):
startPosY += stepPosY
if self.additiveChecked:
- startPosX = xLeftOffset
+ startPosX = canvas.size[0] - xRightOffset - 400
im_drawer.line(
xy=((startPosX, startPosY), (startPosX+17, startPosY)),
fill=self.ADDITIVE_COLOR_POSITIVE, width=2)
@@ -1081,7 +1082,7 @@ class DisplayMappingResults(object):
font=labelFont, fill=BLACK)
if self.genotype.type == 'intercross' and self.dominanceChecked:
- startPosX = xLeftOffset
+ startPosX = canvas.size[0] - xRightOffset - 400
startPosY += stepPosY
im_drawer.line(
xy=((startPosX, startPosY), (startPosX+17, startPosY)),
@@ -1095,7 +1096,7 @@ class DisplayMappingResults(object):
if self.haplotypeAnalystChecked:
startPosY += stepPosY
- startPosX = xLeftOffset
+ startPosX = canvas.size[0] - xRightOffset - 400
im_drawer.line(
xy=((startPosX, startPosY), (startPosX+17, startPosY)),
fill=self.HAPLOTYPE_POSITIVE, width=4)
@@ -1114,7 +1115,10 @@ class DisplayMappingResults(object):
if self.permChecked and self.nperm > 0:
startPosY += stepPosY
- startPosX = xLeftOffset
+ if self.bootChecked and not self.multipleInterval:
+ startPosX = canvas.size[0] - xRightOffset - 400
+ else:
+ startPosX = canvas.size[0] - xRightOffset - 190
im_drawer.line(
xy=((startPosX, startPosY), ( startPosX + 32, startPosY)),
fill=self.SIGNIFICANT_COLOR, width=self.SIGNIFICANT_WIDTH)
@@ -1123,10 +1127,10 @@ class DisplayMappingResults(object):
fill=self.SUGGESTIVE_COLOR, width=self.SUGGESTIVE_WIDTH)
im_drawer.text(
text='Significant %s = %2.2f' % (self.LRS_LOD, self.significant),
- xy=(xLeftOffset+42, startPosY+TEXT_Y_DISPLACEMENT), font=labelFont, fill=BLACK)
+ xy=(startPosX+42, startPosY+TEXT_Y_DISPLACEMENT), font=labelFont, fill=BLACK)
im_drawer.text(
text='Suggestive %s = %2.2f' % (self.LRS_LOD, self.suggestive),
- xy=(xLeftOffset+42, startPosY + TEXT_Y_DISPLACEMENT +stepPosY), font=labelFont,
+ xy=(startPosX+42, startPosY + TEXT_Y_DISPLACEMENT +stepPosY), font=labelFont,
fill=BLACK)
labelFont = ImageFont.truetype(font=VERDANA_FILE, size=12*fontZoom)
@@ -1197,22 +1201,26 @@ class DisplayMappingResults(object):
im_drawer.textsize(string2, font=labelFont)[0])
im_drawer.text(
text=identification,
- xy=(canvas.size[0] - xRightOffset-d, 20*fontZoom), font=labelFont,
+ xy=(xLeftOffset, 20*fontZoom), font=labelFont,
fill=labelColor)
else:
d = 4+ max(
im_drawer.textsize(string1, font=labelFont)[0],
im_drawer.textsize(string2, font=labelFont)[0])
im_drawer.text(
- text=string1, xy=(canvas.size[0] - xRightOffset-d, 35*fontZoom),
+ text=string1, xy=(xLeftOffset, 35*fontZoom),
font=labelFont, fill=labelColor)
im_drawer.text(
- text=string2, xy=(canvas.size[0] - xRightOffset-d, 50*fontZoom),
+ text=string2, xy=(xLeftOffset, 50*fontZoom),
font=labelFont, fill=labelColor)
if string3 != '':
im_drawer.text(
- text=string3, xy=(canvas.size[0] - xRightOffset-d, 65*fontZoom),
+ text=string3, xy=(xLeftOffset, 65*fontZoom),
font=labelFont, fill=labelColor)
+ if string4 != '':
+ im_drawer.text(
+ text=string4, xy=(xLeftOffset, 80*fontZoom),
+ font=labelFont, fill=labelColor)
def drawGeneBand(self, canvas, gifmap, plotXScale, offset= (40, 120, 80, 10), zoom = 1, startMb = None, endMb = None):
@@ -2244,6 +2252,7 @@ class DisplayMappingResults(object):
)
sugg_coords = "%d, %d, %d, %d" % (start_pos_x, suggestiveY-2, rightEdge + 2*zoom, suggestiveY+2)
sig_coords = "%d, %d, %d, %d" % (start_pos_x, significantY-2, rightEdge + 2*zoom, significantY+2)
+
if self.LRS_LOD == 'LRS':
sugg_title = "Suggestive LRS = %0.2f" % self.suggestive
sig_title = "Significant LRS = %0.2f" % self.significant