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| author | BonfaceKilz | 2020-10-12 14:29:00 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2020-10-12 14:30:27 +0300 |
| commit | 1c987139736be4f855c49f4a2f9ce4abc497d9e2 (patch) | |
| tree | f6207543c0b0b657654737cdacd9bd3159768254 /wqflask | |
| parent | 276e0381d62b07525e0ebd28528e59be8230c954 (diff) | |
| download | genenetwork2-1c987139736be4f855c49f4a2f9ce4abc497d9e2.tar.gz | |
Wrap args of print statements correctly using braces
* wqflask/wqflask/wgcna/wgcna_analysis.py: Update print statements by
wrapping then in "()". Run:
"2to3-3.8 -w wqflask/wqflask/wgcna/wgcna_analysis.py"
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/wgcna/wgcna_analysis.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py index c6e03ec5..6bf75216 100644 --- a/wqflask/wqflask/wgcna/wgcna_analysis.py +++ b/wqflask/wqflask/wgcna/wgcna_analysis.py @@ -69,8 +69,8 @@ class WGCNA(object): self.r_enableWGCNAThreads() self.trait_db_list = [trait.strip() for trait in requestform['trait_list'].split(',')] - print("Retrieved phenotype data from database", - requestform['trait_list']) + print(("Retrieved phenotype data from database", + requestform['trait_list'])) helper_functions.get_trait_db_obs(self, self.trait_db_list) # self.input contains the phenotype values we need to send to R @@ -125,14 +125,14 @@ class WGCNA(object): powers = [int(threshold.strip()) for threshold in requestform['SoftThresholds'].rstrip().split(",")] rpow = r_unlist(r_c(powers)) - print("SoftThresholds: {} == {}".format(powers, rpow)) + print(("SoftThresholds: {} == {}".format(powers, rpow))) self.sft = self.r_pickSoftThreshold( rM, powerVector=rpow, verbose=5) - print("PowerEstimate: {}".format(self.sft[0])) + print(("PowerEstimate: {}".format(self.sft[0]))) self.results['PowerEstimate'] = self.sft[0] if self.sft[0][0] is ri.NA_Integer: - print "No power is suitable for the analysis, just use 1" + print("No power is suitable for the analysis, just use 1") # No power could be estimated self.results['Power'] = 1 else: |