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authorzsloan2017-06-14 18:40:35 +0000
committerzsloan2017-06-14 18:40:35 +0000
commitee6e8504e0c6e24d75f9ea939b1e48762dcfc977 (patch)
tree19680d0eb564875ae41bf518e9e41092371a072e /wqflask
parentecd573cc7e150805383d9cdbd41f1b136c9afc0e (diff)
downloadgenenetwork2-ee6e8504e0c6e24d75f9ea939b1e48762dcfc977.tar.gz
Added descriptions for GEMMA and PLINK as well as a warning about the issue with GEMMA where you can't run it simultaneously on two traits from the same group
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/templates/show_trait_mapping_tools.html12
1 files changed, 12 insertions, 0 deletions
diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html
index d8a18f38..bded60d2 100644
--- a/wqflask/wqflask/templates/show_trait_mapping_tools.html
+++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html
@@ -341,6 +341,7 @@
</div>
</div>
<div class="col-xs-6">
+ {% if dataset.group.mapping_id == "1" %}
<dl>
<dt>Interval Mapping</dt>
<dd>Interval mapping is a process in which the statistical significance of a hypothetical QTL is evaluated at regular points across a chromosome, even in the absence of explicit genotype data at those points.</dd>
@@ -349,6 +350,17 @@
<dt>R/qtl</dt>
<dd>R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.</dd>
</dl>
+ {% else %}
+ <dl>
+ <dt>GEMMA</dt>
+ <dd>
+ GEMMA is software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model for genome-wide association studies (GWAS).<br>
+ <font style="color: red;">Note: There currently exists an issue where GEMMA can't be run on traits from the same group simultaneously. If you recieve an error, please wait a few minutes and try again.</font>
+ </dd>
+ <dt>PLINK</dt>
+ <dd>PLINK is a free, open-source whole genome association analysis toolset.</dd>
+ </dl>
+ {% endif %}
</div>
<div id="mapping_result_holder_wrapper" style="display:none;">
<div id="mapping_result_holder"></div>