From ee6e8504e0c6e24d75f9ea939b1e48762dcfc977 Mon Sep 17 00:00:00 2001 From: zsloan Date: Wed, 14 Jun 2017 18:40:35 +0000 Subject: Added descriptions for GEMMA and PLINK as well as a warning about the issue with GEMMA where you can't run it simultaneously on two traits from the same group --- wqflask/wqflask/templates/show_trait_mapping_tools.html | 12 ++++++++++++ 1 file changed, 12 insertions(+) (limited to 'wqflask') diff --git a/wqflask/wqflask/templates/show_trait_mapping_tools.html b/wqflask/wqflask/templates/show_trait_mapping_tools.html index d8a18f38..bded60d2 100644 --- a/wqflask/wqflask/templates/show_trait_mapping_tools.html +++ b/wqflask/wqflask/templates/show_trait_mapping_tools.html @@ -341,6 +341,7 @@
+ {% if dataset.group.mapping_id == "1" %}
Interval Mapping
Interval mapping is a process in which the statistical significance of a hypothetical QTL is evaluated at regular points across a chromosome, even in the absence of explicit genotype data at those points.
@@ -349,6 +350,17 @@
R/qtl
R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses.
+ {% else %} +
+
GEMMA
+
+ GEMMA is software implementing the Genome-wide Efficient Mixed Model Association algorithm for a standard linear mixed model for genome-wide association studies (GWAS).
+ Note: There currently exists an issue where GEMMA can't be run on traits from the same group simultaneously. If you recieve an error, please wait a few minutes and try again. +
+
PLINK
+
PLINK is a free, open-source whole genome association analysis toolset.
+
+ {% endif %}