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authorDannyArends2015-10-08 11:38:29 +0200
committerDannyArends2015-10-08 11:38:29 +0200
commit8f25786a98447039362f74b8a37dbeacf5f07156 (patch)
tree1dcb3600a2c42e7277478474801f317a2e249cfd /wqflask
parentb4370bebdb1f33184ffa22038cbc5d877edde5c6 (diff)
downloadgenenetwork2-8f25786a98447039362f74b8a37dbeacf5f07156.tar.gz
Minor, adding a better check for NA
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/wgcna/wgcna_analysis.py3
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/wgcna/wgcna_analysis.py b/wqflask/wqflask/wgcna/wgcna_analysis.py
index 1174ce47..ba806b6d 100644
--- a/wqflask/wqflask/wgcna/wgcna_analysis.py
+++ b/wqflask/wqflask/wgcna/wgcna_analysis.py
@@ -106,7 +106,8 @@ class WGCNA(object):
print "PowerEstimate: {}".format(self.sft[0])
self.results['PowerEstimate'] = self.sft[0]
- if r_is_NA(self.sft[0]):
+ if self.sft[0][0] == "NA":
+ print "No power is suitable for the analysis, just use 1"
self.results['Power'] = 1 # No power could be estimated
else:
self.results['Power'] = self.sft[0][0] # Use the estimated power