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| author | zsloan | 2020-12-09 15:19:01 -0600 |
|---|---|---|
| committer | zsloan | 2020-12-09 15:19:01 -0600 |
| commit | 66ea1d85feb8cb17a5e8ef9429b7f5353243d634 (patch) | |
| tree | d9168df33bd97b2171e2268f8534811fa1e27a77 /wqflask | |
| parent | 0823820162a371b38756c18ae8d6d3d25fcdfcb1 (diff) | |
| download | genenetwork2-66ea1d85feb8cb17a5e8ef9429b7f5353243d634.tar.gz | |
Fixed another string formatting mistake with setting the bootstrap output file
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/qtlreaper_mapping.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py index b2eb58ae..8341ee55 100644 --- a/wqflask/wqflask/marker_regression/qtlreaper_mapping.py +++ b/wqflask/wqflask/marker_regression/qtlreaper_mapping.py @@ -34,7 +34,7 @@ def run_reaper(this_trait, this_dataset, samples, vals, json_data, num_perm, boo opt_list.append("-b") opt_list.append(f"--n_bootstrap {str(num_bootstrap)}") - opt_list.append(f"--bootstrap_output{webqtlConfig.GENERATED_IMAGE_DIR}{bootstrap_filename}.txt") + opt_list.append(f"--bootstrap_output {webqtlConfig.GENERATED_IMAGE_DIR}{bootstrap_filename}.txt") if num_perm > 0: permu_filename =("{this_dataset.group.name}_PERM_" + ''.join(random.choice(string.ascii_uppercase + |