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| author | Pjotr Prins | 2015-03-17 17:15:56 +0300 |
|---|---|---|
| committer | Pjotr Prins | 2015-03-17 17:15:56 +0300 |
| commit | e615b83d34bcc991e671241db71c6ad0c0267479 (patch) | |
| tree | 88a97cd5024cdce2e84cbd39e0e7be803b08a6ba /wqflask | |
| parent | c4132c7ec5e0d720c4229563c9edddbcfc2e7fa6 (diff) | |
| download | genenetwork2-e615b83d34bcc991e671241db71c6ad0c0267479.tar.gz | |
Release 0.50-gn2-pre1
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/README.md | 22 |
1 files changed, 17 insertions, 5 deletions
diff --git a/wqflask/wqflask/my_pylmm/README.md b/wqflask/wqflask/my_pylmm/README.md index 0c809610..f6b0e72d 100644 --- a/wqflask/wqflask/my_pylmm/README.md +++ b/wqflask/wqflask/my_pylmm/README.md @@ -1,9 +1,21 @@ # RELEASE NOTES -## 0.50-gn2-pre1 +## 0.50-gn2-pre1 release + +This is the first test release of multi-core pylmm into GN2. Both +kinship calculation and GWAS have been made multi-threaded by +introducing the Python multiprocessing module. Note that only +run_other has been updated to use the new routines (so human is still +handled the old way). I have taken care that we can still run both +old-style and new-style LMM (through passing the 'new_code' +boolean). This could be an option in the web server for users to +select and test for any unexpected differences (of which there should +be none, naturally ;). + +The current version can handle missing phenotypes, but as they are +removed there is no way for GN2 to know what SNPs the P-values belong +to. A future version will pass a SNP index to allow for missing +phenotypes. + -1. This is the first test release of multi-core pylmm into GN2. Both - Kinship K calculation and GWAS have been made multi-threaded by - introducing the Python multiprocessing module. Note that only - run_other has been updated to use the new routines.
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