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| author | BonfaceKilz | 2022-06-10 13:07:29 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-06-10 14:45:46 +0300 |
| commit | 62d323779f27cb81e7d6d1182cca8aec6430fd27 (patch) | |
| tree | c9ae2ae2052e672e87913157781f12cf945da7cb /wqflask | |
| parent | e561cf779fb5438dc43c10bf58b6692f30daefb0 (diff) | |
| download | genenetwork2-62d323779f27cb81e7d6d1182cca8aec6430fd27.tar.gz | |
Reverse polarity for gemma additive effects in tests
Fixes broken test. See: #89a7868.
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py | 9 |
1 files changed, 4 insertions, 5 deletions
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py index f2ea22c0..611c0d70 100644 --- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py +++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py @@ -165,13 +165,12 @@ X\tM5\t12\tQ\tE\tMMB\tR\t21.1\tW\t0.65\t0.6""" this_dataset={}, gwa_output_filename=".xw/") expected_results = [ {'name': 'M1', 'chr': 'X/Y', 'Mb': 2.8457155e-05, 'p_value': 0.85, - 'additive': 23.3, 'lod_score': 0.07058107428570727}, + 'additive': -23.3, 'lod_score': 0.07058107428570727}, {'name': 'M2', 'chr': 4, 'Mb': 1.2e-05, 'p_value': 0.5, - 'additive': 24.0, 'lod_score': 0.3010299956639812}, + 'additive': -24.0, 'lod_score': 0.3010299956639812}, {'name': 'M4', 'chr': 'Y', 'Mb': 1.2e-05, 'p_value': 0.7, - 'additive': 11.6, 'lod_score': 0.1549019599857432}, - {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': 21.1, 'lod_score': 0.22184874961635637}] - + 'additive': -11.6, 'lod_score': 0.1549019599857432}, + {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': -21.1, 'lod_score': 0.22184874961635637}] self.assertEqual(expected_results, results) @mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/tmp") |