From 62d323779f27cb81e7d6d1182cca8aec6430fd27 Mon Sep 17 00:00:00 2001
From: BonfaceKilz
Date: Fri, 10 Jun 2022 13:07:29 +0300
Subject: Reverse polarity for gemma additive effects in tests
Fixes broken test. See: #89a7868.
---
.../tests/unit/wqflask/marker_regression/test_gemma_mapping.py | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
(limited to 'wqflask')
diff --git a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
index f2ea22c0..611c0d70 100644
--- a/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/unit/wqflask/marker_regression/test_gemma_mapping.py
@@ -165,13 +165,12 @@ X\tM5\t12\tQ\tE\tMMB\tR\t21.1\tW\t0.65\t0.6"""
this_dataset={}, gwa_output_filename=".xw/")
expected_results = [
{'name': 'M1', 'chr': 'X/Y', 'Mb': 2.8457155e-05, 'p_value': 0.85,
- 'additive': 23.3, 'lod_score': 0.07058107428570727},
+ 'additive': -23.3, 'lod_score': 0.07058107428570727},
{'name': 'M2', 'chr': 4, 'Mb': 1.2e-05, 'p_value': 0.5,
- 'additive': 24.0, 'lod_score': 0.3010299956639812},
+ 'additive': -24.0, 'lod_score': 0.3010299956639812},
{'name': 'M4', 'chr': 'Y', 'Mb': 1.2e-05, 'p_value': 0.7,
- 'additive': 11.6, 'lod_score': 0.1549019599857432},
- {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': 21.1, 'lod_score': 0.22184874961635637}]
-
+ 'additive': -11.6, 'lod_score': 0.1549019599857432},
+ {'name': 'M5', 'chr': 'X', 'Mb': 1.2e-05, 'p_value': 0.6, 'additive': -21.1, 'lod_score': 0.22184874961635637}]
self.assertEqual(expected_results, results)
@mock.patch("wqflask.marker_regression.gemma_mapping.TEMPDIR", "/home/tmp")
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