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authorPjotr Prins2015-04-13 10:15:59 +0200
committerPjotr Prins2015-04-13 10:15:59 +0200
commit6cef9c3b27d92383f89a432f6fa0e9fd16107f66 (patch)
treebdad992faa88f7473eb2227aa90f5a659aafd03b /wqflask
parent1823434ff8b54df0bd8ce1d7d19a37d74e850dd5 (diff)
downloadgenenetwork2-6cef9c3b27d92383f89a432f6fa0e9fd16107f66.tar.gz
Added examples for convertlmm.py
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py10
1 files changed, 8 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index 3b6b5d70..4312fed0 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -1,5 +1,5 @@
-# This is a converter for common LMM formats, so as to keep complexity
-# outside the main routines.
+# This is a converter for common LMM formats, so as to keep file
+# reader complexity outside the main routines.
# Copyright (C) 2015 Pjotr Prins (pjotr.prins@thebird.nl)
#
@@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen
Convert files for runlmm.py processing. Writes to stdout by default.
try --help for more information
+
+Examples:
+
+ python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno
+
+ python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno
"""
# if len(args) == 0: