From 6cef9c3b27d92383f89a432f6fa0e9fd16107f66 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 13 Apr 2015 10:15:59 +0200
Subject: Added examples for convertlmm.py

---
 wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

(limited to 'wqflask')

diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index 3b6b5d70..4312fed0 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -1,5 +1,5 @@
-# This is a converter for common LMM formats, so as to keep complexity
-# outside the main routines. 
+# This is a converter for common LMM formats, so as to keep file
+# reader complexity outside the main routines.
 
 # Copyright (C) 2015  Pjotr Prins (pjotr.prins@thebird.nl)
 #
@@ -31,6 +31,12 @@ python convertlmm.py [--plink] [--prefix out_basename] [--kinship kfile] [--phen
   Convert files for runlmm.py processing. Writes to stdout by default.
 
   try --help for more information
+
+Examples:
+
+  python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos > test.pheno
+
+  python ./my_pylmm/pyLMM/convertlmm.py --plink --pheno data/test_snps.132k.clean.noX.fake.phenos --geno data/test_snps.132k.clean.noX > test.geno
 """
 
 # if len(args) == 0:
-- 
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