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| author | zsloan | 2019-04-05 15:03:04 -0500 |
|---|---|---|
| committer | zsloan | 2019-04-05 15:03:04 -0500 |
| commit | c8a0287f7059e1d723ae4b57eee88f3a4937d2f2 (patch) | |
| tree | 762375076be9b5a2dbd4e8a59d23b9689293e0fb /wqflask | |
| parent | 115aa88a95eab8f8e5c5c41f6fbb552e322314ae (diff) | |
| download | genenetwork2-c8a0287f7059e1d723ae4b57eee88f3a4937d2f2.tar.gz | |
Fixed issue that caused error for phenotype searches (kind of a quick fix and I do a try/except for whether it can build the trait object; ideally I should correctly filter out datasets)
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/gsearch.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index 287ffde2..7cd8e543 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -170,8 +170,11 @@ class GSearch(object): #this_trait = GeneralTrait(dataset=dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) this_trait['max_lrs_text'] = "N/A" if this_trait['dataset'] == this_trait['group'] + "Publish": - trait_ob = GeneralTrait(dataset_name=this_trait['dataset'], name=this_trait['name'], get_qtl_info=True, get_sample_info=False) - if trait_ob.locus_chr != "" and trait_ob.locus_mb != "": - this_trait['max_lrs_text'] = "Chr" + str(trait_ob.locus_chr) + ": " + str(trait_ob.locus_mb) + try: + trait_ob = GeneralTrait(dataset_name=this_trait['dataset'], name=this_trait['name'], get_qtl_info=True, get_sample_info=False) + if trait_ob.locus_chr != "" and trait_ob.locus_mb != "": + this_trait['max_lrs_text'] = "Chr" + str(trait_ob.locus_chr) + ": " + str(trait_ob.locus_mb) + except: + this_trait['max_lrs_text'] = "N/A" self.trait_list.append(this_trait) |