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| author | zsloan | 2020-05-12 09:57:13 -0500 |
|---|---|---|
| committer | zsloan | 2020-05-12 09:57:13 -0500 |
| commit | 313b6e7d936f3982c9c6c83c909a8e68f7232ceb (patch) | |
| tree | 49eea452f94cae7de19cb755dcd96aa935f52c05 /wqflask/wqflask | |
| parent | ecb0a828de3ba744da82a45e1dc7a55906fd5fb1 (diff) | |
| download | genenetwork2-313b6e7d936f3982c9c6c83c909a8e68f7232ceb.tar.gz | |
Added change for F2s in r/qtl and fixed minor issue in save_user in redis_tools
Diffstat (limited to 'wqflask/wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/rqtl_mapping.py | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/wqflask/wqflask/marker_regression/rqtl_mapping.py b/wqflask/wqflask/marker_regression/rqtl_mapping.py index dd35d89a..ecce9a07 100644 --- a/wqflask/wqflask/marker_regression/rqtl_mapping.py +++ b/wqflask/wqflask/marker_regression/rqtl_mapping.py @@ -156,6 +156,9 @@ def generate_cross_from_geno(dataset, scale_units): # TODO: Need to figur if(type == '4-way'){ cat('Loading in as 4-WAY\n') cross = read.cross(file=out, 'csvr', genotypes=genocodes, crosstype="4way", convertXdata=FALSE) # Load the created cross file using R/qtl read.cross + }else if(type == 'f2'){ + cat('Loading in as F2\n') + cross = read.cross(file=out, 'csvr', genotypes=genocodes, crosstype="f2") # Load the created cross file using R/qtl read.cross }else{ cat('Loading in as normal\n') cross = read.cross(file=out, 'csvr', genotypes=genocodes) # Load the created cross file using R/qtl read.cross |