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| author | zsloan | 2017-09-05 11:48:12 -0500 |
|---|---|---|
| committer | GitHub | 2017-09-05 11:48:12 -0500 |
| commit | 90aab8b2f41f3a017d70e069c8812110ce3d30fb (patch) | |
| tree | d5c93b428255c049fe4a8474143d1b8494f4c8e7 /wqflask/utility | |
| parent | d86f07f616d6892707dd26c87bf70db1a50f070a (diff) | |
| parent | 4f06516befcb16b802afcb81bae28b55279a3c1e (diff) | |
| download | genenetwork2-90aab8b2f41f3a017d70e069c8812110ce3d30fb.tar.gz | |
Merge pull request #259 from pjotrp/testing
gemma-wrapper: find binary in profile
Diffstat (limited to 'wqflask/utility')
| -rw-r--r-- | wqflask/utility/tools.py | 12 |
1 files changed, 8 insertions, 4 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index 867bc5c8..c5685cdd 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -113,6 +113,9 @@ def pylmm_command(guess=None): def gemma_command(guess=None): return assert_bin(get_setting("GEMMA_COMMAND",guess)) +def gemma_wrapper_command(guess=None): + return assert_bin(get_setting("GEMMA_WRAPPER_COMMAND",guess)) + def plink_command(guess=None): return assert_bin(get_setting("PLINK_COMMAND",guess)) @@ -240,10 +243,11 @@ JS_GUIX_PATH = get_setting('JS_GUIX_PATH') JS_GN_PATH = get_setting('JS_GN_PATH') # assert_dir(JS_GN_PATH) -PYLMM_COMMAND = pylmm_command() -GEMMA_COMMAND = gemma_command() -PLINK_COMMAND = plink_command() -TEMPDIR = tempdir() # defaults to UNIX TMPDIR +PYLMM_COMMAND = pylmm_command() +GEMMA_COMMAND = gemma_command() +GEMMA_WRAPPER_COMMAND = gemma_wrapper_command() +PLINK_COMMAND = plink_command() +TEMPDIR = tempdir() # defaults to UNIX TMPDIR # ---- Handle specific JS modules JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher")) |