From 4f06516befcb16b802afcb81bae28b55279a3c1e Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 4 Sep 2017 02:15:11 -0500
Subject: gemma-wrapper: find binary in profile

---
 wqflask/utility/tools.py | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

(limited to 'wqflask/utility')

diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py
index 867bc5c8..c5685cdd 100644
--- a/wqflask/utility/tools.py
+++ b/wqflask/utility/tools.py
@@ -113,6 +113,9 @@ def pylmm_command(guess=None):
 def gemma_command(guess=None):
     return assert_bin(get_setting("GEMMA_COMMAND",guess))
 
+def gemma_wrapper_command(guess=None):
+    return assert_bin(get_setting("GEMMA_WRAPPER_COMMAND",guess))
+
 def plink_command(guess=None):
     return assert_bin(get_setting("PLINK_COMMAND",guess))
 
@@ -240,10 +243,11 @@ JS_GUIX_PATH       = get_setting('JS_GUIX_PATH')
 JS_GN_PATH         = get_setting('JS_GN_PATH')
 # assert_dir(JS_GN_PATH)
 
-PYLMM_COMMAND      = pylmm_command()
-GEMMA_COMMAND      = gemma_command()
-PLINK_COMMAND      = plink_command()
-TEMPDIR            = tempdir() # defaults to UNIX TMPDIR
+PYLMM_COMMAND         = pylmm_command()
+GEMMA_COMMAND         = gemma_command()
+GEMMA_WRAPPER_COMMAND = gemma_wrapper_command()
+PLINK_COMMAND         = plink_command()
+TEMPDIR               = tempdir() # defaults to UNIX TMPDIR
 
 # ---- Handle specific JS modules
 JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher"))
-- 
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